BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2116.p (300 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093575|ref|YP_001098650.1| putative two-component hybrid s... 128 4e-31 gi|134094677|ref|YP_001099752.1| putative two-component sensor k... 115 2e-27 gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two... 103 2e-23 gi|134094133|ref|YP_001099208.1| putative response regulator rec... 95 4e-21 gi|134094344|ref|YP_001099419.1| two-component sensor [Herminiim... 81 6e-17 >gi|134093575|ref|YP_001098650.1| putative two-component hybrid sensor and regulator [Herminiimonas arsenicoxydans] Length = 468 Score = 128 bits (321), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 83/262 (31%), Positives = 139/262 (53%), Gaps = 10/262 (3%) Query: 40 RQTLEAARLQQQE-RQTLLQAERTAR---AEGQRASRIKEQFVATLSQDLRTPLNAILGW 95 +Q LEA LQ +E + L+ A A+ A+ + A+ +E+F++ L+ +LR+PL I Sbjct: 68 KQVLEALVLQLREANENLVLAAFGAQDMQAKAESANHRQEEFLSMLAHELRSPLAPIAMA 127 Query: 96 AQYLLRDAADPVKLHKGLQVIERNARLQAQLVEELLDMNRILSGKLRIATEQITLEEVMA 155 A L + L K +I R A LV++LLD +R+ +G + + + L E++ Sbjct: 128 ADLLGKITTAHPMLPKLYGIISRQVGHMAHLVDDLLDASRVSTGNITLQKRSLLLSEIID 187 Query: 156 DAVEEVRSAAVAKTIQIDATSPASGVVL-GDRTRLRQILCKLLINAIRFTPPQGRVVLCS 214 AVE + + Q+ T P VV+ GD RL Q L+INA +FTP G + + + Sbjct: 188 SAVETSQPFINQRNQQLTITLPEDTVVINGDLVRLAQAFANLIINATKFTPVDGHIDISA 247 Query: 215 HQRQDEIELEVSDTGRGLAPALLAHLLE-----PDGPSHAGAGLGLGLAVVRQLVELHGG 269 D +++ + D G G+AP + + + P + GLG+GL++VR +V++HGG Sbjct: 248 QVLADVVKVSIKDNGMGIAPDIQPFIFDLFRQGPHSLDRSQGGLGIGLSLVRTVVQMHGG 307 Query: 270 RLRAESPGPGLGASFYVALPLA 291 + S G G G+ F+V LP++ Sbjct: 308 TVSVYSAGLGCGSEFFVVLPIS 329 >gi|134094677|ref|YP_001099752.1| putative two-component sensor kinase (partial) [Herminiimonas arsenicoxydans] Length = 577 Score = 115 bits (288), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 93/268 (34%), Positives = 137/268 (51%), Gaps = 12/268 (4%) Query: 31 RVLGQHALQRQT-LEAARLQQQERQTLLQAERTARAEGQRASRIKEQFVATLSQDLRTPL 89 R L Q L RQ L ++ +R + A ++A+ + A++ K ++VA +S +LR+PL Sbjct: 84 RHLAQDDLNRQNELLTQEIEAHQRTDV--ALQSAKEAAEFANQAKTRYVAGISHELRSPL 141 Query: 90 NAILGWAQYLLRDAADPVKLHKGLQVIERNARLQAQLVEELLDMNRILSGKLRIATEQIT 149 N+ILG++Q LL++ +Q I R+ LV+ELLD+ RI + ++R+ I Sbjct: 142 NSILGYSQILLKNEHLAAAPRTAIQTIHRSGEHLLGLVDELLDLARIEADRMRLEPAPIL 201 Query: 150 LEEVMADAVEEVRSAAVAKTIQIDATSPA--SGVVLGDRTRLRQILCKLLINAIRFTPPQ 207 L + D + VR A AK +++ T S VL D RLRQI LL NA+RFT Sbjct: 202 LSAFLEDLLSMVRPQAEAKGLKLLCTYNGKISRYVLADGKRLRQIFINLLTNAVRFT-DD 260 Query: 208 GRVVLCSHQRQDEIELEVSDTGRGLAPALLAHLLEPDGPSHAG-----AGLGLGLAVVRQ 262 G V L + +V DTG G+A + +P AG G GLGLA+ + Sbjct: 261 GSVTLHVECSPASVRFDVVDTGIGIAVQDRQRIFQPFERGAAGRLRGEPGAGLGLAITEK 320 Query: 263 LVELHGGRLRAESPGPGLGASFYVALPL 290 L+ L G L S G G++F V LPL Sbjct: 321 LILLMNGSLNLVSM-QGQGSTFIVRLPL 347 >gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation [Herminiimonas arsenicoxydans] Length = 921 Score = 103 bits (256), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 116/229 (50%), Gaps = 8/229 (3%) Query: 70 ASRIKEQFVATLSQDLRTPLNAILGWAQYLLRDAADPVKLHKGL-QVIERNARLQAQLVE 128 + R++ ++ LS DLRTPL +++G ++ L + L Q + AR + LV Sbjct: 681 SERLRNSLLSALSHDLRTPLTSLVGLSESLTMSKPPLTSSQQELAQALHDEARRMSNLVS 740 Query: 129 ELLDMNRILSGKLRIATEQITLEEVMADAVEEVRSAAVAKTIQIDATSPASGVVLGDRTR 188 LLDM RI SG+++ + + EEV+ A+ +SA I+ +P +V D Sbjct: 741 NLLDMARIQSGEVKFNLQWLQFEEVVGSALRASQSAIAHHEIKT-RLAPDLPLVRFDAVL 799 Query: 189 LRQILCKLLINAIRFTPPQGRVVLCSHQRQDEIELEVSDTGRGLAP----ALLAHLLEPD 244 + ++LC L+ NA ++TP R+V+ + +E+ V D G GL A+ + Sbjct: 800 IERVLCNLIENAAKYTPAGSRIVIAAEISGRFLEVSVYDNGPGLPAGQEEAIFDKFTRGE 859 Query: 245 GPSHAGAGLGLGLAVVRQLVELHGGRLRAESPGPGLGASFYVALPLARP 293 S A G+GLGLA+ R +VE H G +RA + P GAS LPL P Sbjct: 860 RES-ATPGVGLGLAICRAIVEAHQGTIRA-AHSPDGGASINFTLPLGTP 906 >gi|134094133|ref|YP_001099208.1| putative response regulator receiver [Herminiimonas arsenicoxydans] Length = 560 Score = 94.7 bits (234), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 82/265 (30%), Positives = 134/265 (50%), Gaps = 28/265 (10%) Query: 52 ERQTLLQAERT-----ARAEGQRASRIKEQFVATLSQDLRTPLNAILGWAQYLLRDAADP 106 ERQ L ERT A+ E + A+R K +F+A +S ++RTP+N +LG Q L A+D Sbjct: 165 ERQVL---ERTHDLSLAKNEAEAANRAKSEFLAVMSHEIRTPMNGMLGMMQLALAQASD- 220 Query: 107 VKLHKGLQVIERNARLQAQLVEELLDMNRILSGKLRIATEQITLEEVMADAVE----EVR 162 V+ + L+ + +A ++ ++LD +++ SG L L + + +E ++ Sbjct: 221 VEQREYLETAQYSAEALLTILNDILDFSKLESGHLEFEAVTFDLPKAVDSVIELMSARMQ 280 Query: 163 SAAVAKTIQIDATSPASGVVLGDRTRLRQILCKLLINAIRFTPPQGRVVLC-----SHQR 217 AA++ + DA P ++ GD RLRQ+L L+ NA++FT QG V L + Sbjct: 281 GAALSLNAECDADLPR--LLTGDVGRLRQVLLNLIGNALKFT-EQGSVTLKIERLPASGT 337 Query: 218 QDEIELEVSDTGRGLAPA----LLAHLLEPDGP-SHAGAGLGLGLAVVRQLVELHGGRLR 272 Q + V D+G G+ L + D S G GLGL++ +++VE+ G + Sbjct: 338 QIPLRFTVIDSGIGITAEEQTRLFQSFSQADHSISRRFGGTGLGLSICKKIVEMQRGCIG 397 Query: 273 AESPGPGLGASFYVALPLARPAIKP 297 ES PG G+ F+ L PA +P Sbjct: 398 VEST-PGEGSRFWFELTFV-PAPEP 420 >gi|134094344|ref|YP_001099419.1| two-component sensor [Herminiimonas arsenicoxydans] Length = 430 Score = 81.3 bits (199), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 78/287 (27%), Positives = 130/287 (45%), Gaps = 25/287 (8%) Query: 15 LPKTSDYLDYLAQA-VERVLGQHALQRQTLEAARLQQQERQTLLQAERTARAEGQRASRI 73 L ++ D++DY+ E+ L R+ + + RQ L+ + T E +R + Sbjct: 149 LIRSPDFIDYIILGHYEQPLTLSLKDRKLIVQIIPFENRRQILVTHDAT---ESERIEMM 205 Query: 74 KEQFVATLSQDLRTPLNAILGWAQYLLR--DAADPVKLHKGLQVIERNARLQAQLVEELL 131 + F+A S +LRTPL I G+ + D +++ +IE+ R+Q LVE++L Sbjct: 206 RRDFIANASHELRTPLTVINGFLEIAQAQPDLDQAIRMSHLKLMIEQGQRMQ-NLVEDML 264 Query: 132 DMNRILSGKLRIATEQITLEEVMADAVEEVRSAAVAKT-----IQIDATSPASGVVLGDR 186 + R+ S + E + + ++ E++R A A + I + P + G Sbjct: 265 TLTRLESIDYPLRPEHVNIHNLL----EQIRQEAEALSGGRHEISLTIDGPD---IEGSA 317 Query: 187 TRLRQILCKLLINAIRFTPPQGRVVLCSHQRQDEIELEVSDTGRGLAPALLAHLLE---- 242 LR L+ NA+R+TP GR+ + + V DTG G+ P L L E Sbjct: 318 DELRSAFSNLVSNAVRYTPIHGRIDIKWQNTAAGPQFSVKDTGIGMRPEHLVRLTERFYR 377 Query: 243 -PDGPSHAGAGLGLGLAVVRQLVELHGGRLRAESPGPGLGASFYVAL 288 S G GLGLA+V+ ++ HG L ES P +G++F V Sbjct: 378 VDKSRSRETQGTGLGLAIVKHVLLRHGAVLAIESQ-PDVGSTFSVQF 423 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.135 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 469,616 Number of extensions: 15809 Number of successful extensions: 111 Number of sequences better than 1.0e-08: 24 Number of HSP's gapped: 99 Number of HSP's successfully gapped: 24 Length of query: 300 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 219 Effective length of database: 733,452 Effective search space: 160625988 Effective search space used: 160625988 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)