BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2115.p
         (153 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094164|ref|YP_001099239.1| putative response regulator rec...   119   1e-28
gi|134094525|ref|YP_001099600.1| chemotactic response regulator ...    54   5e-09

>gi|134094164|ref|YP_001099239.1| putative response regulator
           receiver (Che-Y like) [Herminiimonas arsenicoxydans]
          Length = 148

 Score =  119 bits (297), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/137 (44%), Positives = 85/137 (62%), Gaps = 2/137 (1%)

Query: 5   QSVNIILVEDDDGHALLVEKNLRRAGLVNGFTRLHDGQAALDYFF--GSELPRSELQQLV 62
           Q V+I+L ED    A +  + L++ GLVN  T + DGQ ALDY F  G    R      +
Sbjct: 6   QPVHILLAEDTPTDAEMTLRALKKVGLVNNITWVKDGQEALDYIFRKGEFANRVNGDPTL 65

Query: 63  VLLDVNMPRVNGVEVLRRMKQEPATVAIPVIMLTTTDDPREIARCYEVGCNVYITKPVEY 122
           ++LD+ MP+VNG+EVL+ +K   +T  IPVIMLT++ +  +I RCYE G N YI KPVE 
Sbjct: 66  IMLDLKMPKVNGLEVLKAIKTTESTRIIPVIMLTSSAEEPDIVRCYEHGVNSYIVKPVES 125

Query: 123 DDFIEAVRRLGFFLQVV 139
           D F E V + GF+  ++
Sbjct: 126 DKFFEEVSKAGFYWAIL 142


>gi|134094525|ref|YP_001099600.1| chemotactic response regulator
           [Herminiimonas arsenicoxydans]
          Length = 121

 Score = 53.5 bits (127), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 11/126 (8%)

Query: 8   NIILVEDDDGHALLVEKNLRRAGLVNGFTRLHDGQAALDYFFGSELPRSELQQL-VVLLD 66
            I+ V+D      +V  +LR AG     T   DGQ  LD        ++++Q   +VL D
Sbjct: 4   TILAVDDSGSLRQMVVFSLRAAGY--QVTEAVDGQDGLD--------KAQMQVFDLVLTD 53

Query: 67  VNMPRVNGVEVLRRMKQEPATVAIPVIMLTTTDDPREIARCYEVGCNVYITKPVEYDDFI 126
            NMPR++G  ++R ++  P    +P+++LTT       A+    G N ++ KP +     
Sbjct: 54  QNMPRMDGFSLIRALRALPTYQKVPILVLTTESSDEMKAKGRAAGANGWLVKPFDPQRLT 113

Query: 127 EAVRRL 132
           E V+++
Sbjct: 114 EVVKKV 119


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.140    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 278,070
Number of extensions: 10673
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 3
Length of query: 153
Length of database: 1,000,347
Length adjustment: 74
Effective length of query: 79
Effective length of database: 756,517
Effective search space: 59764843
Effective search space used: 59764843
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)