BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2114.p (534 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094163|ref|YP_001099238.1| putative two-component histidin... 127 1e-30 gi|134093475|ref|YP_001098550.1| putative two-component system s... 75 7e-15 gi|134094133|ref|YP_001099208.1| putative response regulator rec... 75 9e-15 gi|134094677|ref|YP_001099752.1| putative two-component sensor k... 74 1e-14 gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two... 74 2e-14 >gi|134094163|ref|YP_001099238.1| putative two-component histidine kinase sensor protein [Herminiimonas arsenicoxydans] Length = 463 Score = 127 bits (320), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 90/270 (33%), Positives = 135/270 (50%), Gaps = 37/270 (13%) Query: 260 RQELEQRARELADVNHDLRQQTQDNEMFIYSVSHDLRSPLVNLQGFSKEITHATRDLLDE 319 ++++E+ A +L N +L E F YSVSHDLRSPL + G+S+ D LD+ Sbjct: 225 QRKIEKNAAQLELTNKEL-------ESFSYSVSHDLRSPLRAIDGYSRMFEEDFADRLDD 277 Query: 320 VERLHLPEADRNRLRALVEEDIHTSLRFIQNAVTRSAGIIDAMLRLSRAGRVEYQPVMLD 379 R RL L I+ + + +ID +L SR GR +D Sbjct: 278 EGR---------RL-----------LSVIRVSSKKMGQLIDDLLAFSRMGRKPVDSAKVD 317 Query: 380 MHAIAQRIVSAMNGSIRAKAAQVEIEPDLPPAYGDPTSVEQVLGNLVANAVNYLDPARQG 439 M+A+ + + + S +K + +LP +GD + QV NL+ANAV Y + Sbjct: 318 MNALVDEVWTEVCAS--SKTVLPLKKTNLPAVWGDQALLRQVWMNLLANAVKYSSKKEEQ 375 Query: 440 HITIGHVRQADNIAAAPSLVTYFVRDNGLGIPAAYMDKMFIAFQRLHG-NAAKGEGIGLA 498 + I +Q+++ V Y VRDNG+G + +K+F FQRLH N G G+GLA Sbjct: 376 IVEIT-AKQSEH------EVVYTVRDNGVGFDMRFYNKLFGVFQRLHTENEFPGTGVGLA 428 Query: 499 LVKRVVERHGGRIWVESVEGQGSCFFVALP 528 + +RV+ RHGGRIW ES + + F +LP Sbjct: 429 IAQRVIVRHGGRIWAESKPDEYTIFNFSLP 458 >gi|134093475|ref|YP_001098550.1| putative two-component system sensor histidine kinase [Herminiimonas arsenicoxydans] Length = 799 Score = 75.1 bits (183), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 118/247 (47%), Gaps = 41/247 (16%) Query: 291 VSHDLRSPLVNLQGFSKEITHATRDLLDEVERLHLPEADRNRLRALVEEDIHTSLRFIQN 350 +SHD+R+P ++ L L E + AL ++++ T I+ Sbjct: 578 LSHDMRAPQASI--------------------LALLELQQESSSALSQQELFTR---IEK 614 Query: 351 AVTRSAGIIDAMLRLSRAGRVEYQPVMLDMHAIAQRIVSAMNGSIRAKAAQVEIEPDLPP 410 A ++ G+ D ++L+RA EY+ +D + M AK+ ++++ D+ Sbjct: 615 ACRKTLGLADNFVQLARAESQEYRLEEVDFQDMLFDAADEMWS--LAKSRHIDLQVDI-- 670 Query: 411 AYGD-PTSVEQVL-----GNLVANAVNYLDPARQGHITIGHVRQADNIAAAPSLVTYFVR 464 A G+ P +V++VL NL++NA+NY H I +A + +V +R Sbjct: 671 AEGEYPVNVDRVLMTRALTNLISNAINY----SPDHTKIQCSARAQQLNDQTHVVCN-IR 725 Query: 465 DNGLGIPAAYMDKMFIAFQRLH-GNAAKGEGIGLALV--KRVVERHGGRIWVESVEGQGS 521 D+G GI A K+F FQR+ N + EG+GL LV K V+ERH G I S G+G+ Sbjct: 726 DHGYGIAEADQGKLFQRFQRVDLPNQPRHEGVGLGLVFVKTVIERHQGEIRFSSTAGKGT 785 Query: 522 CFFVALP 528 F + LP Sbjct: 786 TFTLTLP 792 >gi|134094133|ref|YP_001099208.1| putative response regulator receiver [Herminiimonas arsenicoxydans] Length = 560 Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 72/284 (25%), Positives = 133/284 (46%), Gaps = 40/284 (14%) Query: 260 RQELEQRARELADVNHDLRQQTQDNEMFIYSVSHDLRSPLVNLQGFSKEITHATRDLLDE 319 RQ LE R +L+ ++ + F+ +SH++R+P+ + G + Sbjct: 166 RQVLE-RTHDLSLAKNEAEAANRAKSEFLAVMSHEIRTPMNGMLGMMQ------------ 212 Query: 320 VERLHLPEADRNRLRALVEEDIHTSLRFIQNAVTRSAGIIDAMLRLSR--AGRVEYQPVM 377 L L +A R +E +++ + I++ +L S+ +G +E++ V Sbjct: 213 ---LALAQASDVEQREYLETAQYSAEALLT--------ILNDILDFSKLESGHLEFEAVT 261 Query: 378 LDMHAIAQRIVSAMNGSIRAKAAQV--EIEPDLPPAY-GDPTSVEQVLGNLVANAVNYLD 434 D+ ++ M+ ++ A + E + DLP GD + QVL NL+ NA+ + + Sbjct: 262 FDLPKAVDSVIELMSARMQGAALSLNAECDADLPRLLTGDVGRLRQVLLNLIGNALKFTE 321 Query: 435 PARQGHITIGHVRQADNIAAAPSLVTYFVRDNGLGIPAAYMDKMFIAFQRLHGNAAK--- 491 QG +T+ R + P + + V D+G+GI A ++F +F + + ++ Sbjct: 322 ---QGSVTLKIERLPASGTQIP--LRFTVIDSGIGITAEEQTRLFQSFSQADHSISRRFG 376 Query: 492 GEGIGLALVKRVVERHGGRIWVESVEGQGSCFFVAL---PARPP 532 G G+GL++ K++VE G I VES G+GS F+ L PA P Sbjct: 377 GTGLGLSICKKIVEMQRGCIGVESTPGEGSRFWFELTFVPAPEP 420 >gi|134094677|ref|YP_001099752.1| putative two-component sensor kinase (partial) [Herminiimonas arsenicoxydans] Length = 577 Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/272 (25%), Positives = 128/272 (47%), Gaps = 46/272 (16%) Query: 265 QRARELADVNHDLRQQTQDNEMFIYSVSHDLRSPLVNLQGFSKEITHATRDLLDEVERLH 324 Q A+E A+ + Q ++ +SH+LRSPL ++ G+S+ + ++ H Sbjct: 113 QSAKEAAEFAN------QAKTRYVAGISHELRSPLNSILGYSQIL----------LKNEH 156 Query: 325 LPEADRNRLRALVEEDIHTSLRFIQNAVTRSAGIIDAMLRLSR--AGRVEYQPVMLDMHA 382 L A R T+++ I + G++D +L L+R A R+ +P + + A Sbjct: 157 LAAAPR------------TAIQTIHRSGEHLLGLVDELLDLARIEADRMRLEPAPILLSA 204 Query: 383 IAQRIVSAMNGSIRAKAAQVEIEPDLPPA---YGDPTSVEQVLGNLVANAVNYLDPARQG 439 + ++S + AK ++ + + D + Q+ NL+ NAV + D G Sbjct: 205 FLEDLLSMVRPQAEAKGLKLLCTYNGKISRYVLADGKRLRQIFINLLTNAVRFTD---DG 261 Query: 440 HITIGHVRQADNIAAAPSLVTYFVRDNGLGIPAAYMDKMFIAFQRLHGNAAKGE---GIG 496 +T+ ++ +P+ V + V D G+GI ++F F+R +GE G+G Sbjct: 262 SVTL-------HVECSPASVRFDVVDTGIGIAVQDRQRIFQPFERGAAGRLRGEPGAGLG 314 Query: 497 LALVKRVVERHGGRIWVESVEGQGSCFFVALP 528 LA+ ++++ G + + S++GQGS F V LP Sbjct: 315 LAITEKLILLMNGSLNLVSMQGQGSTFIVRLP 346 >gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation [Herminiimonas arsenicoxydans] Length = 921 Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/250 (27%), Positives = 109/250 (43%), Gaps = 30/250 (12%) Query: 287 FIYSVSHDLRSPLVNLQGFSKEITHATRDLLDEVERLHLPEADRNRLRALVEEDIHTSLR 346 + ++SHDLR+PL +L G S+ +T + L + L + +H R Sbjct: 688 LLSALSHDLRTPLTSLVGLSESLTMSKPPLTSSQQEL--------------AQALHDEAR 733 Query: 347 FIQNAVTRSAGIIDAMLRLSRAGRVEYQPVMLDMHAIAQRIVSAMNGSIRAKAAQVEIEP 406 + N V+ ++D M R+ ++G V++ L + + A +I + + P Sbjct: 734 RMSNLVS---NLLD-MARI-QSGEVKFNLQWLQFEEVVGSALRASQSAIAHHEIKTRLAP 788 Query: 407 DLPPAYGDPTSVEQVLGNLVANAVNYLDPARQGHITIGHVRQADNIAAAPSLVTYFVRDN 466 DLP D +E+VL NL+ NA Y PA + + + + V DN Sbjct: 789 DLPLVRFDAVLIERVLCNLIENAAKY-TPAGSRIVIAAEI--------SGRFLEVSVYDN 839 Query: 467 GLGIPAAYMDKMFIAFQRLH-GNAAKGEGIGLALVKRVVERHGGRI-WVESVEGQGSCFF 524 G G+PA + +F F R +A G G+GLA+ + +VE H G I S +G S F Sbjct: 840 GPGLPAGQEEAIFDKFTRGERESATPGVGLGLAICRAIVEAHQGTIRAAHSPDGGASINF 899 Query: 525 VALPARPPVI 534 PP I Sbjct: 900 TLPLGTPPAI 909 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.133 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 956,437 Number of extensions: 38232 Number of successful extensions: 251 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 236 Number of HSP's successfully gapped: 15 Length of query: 534 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 448 Effective length of database: 716,977 Effective search space: 321205696 Effective search space used: 321205696 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)