BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2112.p
         (565 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094316|ref|YP_001099391.1| glucose-6-phosphate isomerase [...   551   e-158

>gi|134094316|ref|YP_001099391.1| glucose-6-phosphate isomerase
           [Herminiimonas arsenicoxydans]
          Length = 518

 Score =  551 bits (1420), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 269/518 (51%), Positives = 354/518 (68%), Gaps = 9/518 (1%)

Query: 47  LFAADLQRGQSLVAEGAGIYLDYSKNLVSGQTMSLLIQLARQCGLQDRIEAMFRGDRINV 106
           +FA D  R   L  EGAG++ DYSKN+V+ QTM LL  LAR+  ++ + +AMF G++IN 
Sbjct: 1   MFAQDPARFTKLSTEGAGLFFDYSKNIVNDQTMDLLHALARETRVEAQRDAMFAGEQINR 60

Query: 107 TEQRAVLHTALRKPAGEQLVVEGEEVVAQVQQVLTRMEAFAEQVRSGQWTGHTGGRIRHV 166
           TE RAVLHTALR+P  ++L ++G +++  +  VL RM AF+E+VRSG W G+ G  I  +
Sbjct: 61  TEHRAVLHTALRRPRSDKLALDGHDIIPDIHAVLDRMAAFSERVRSGTWRGYDGREITDI 120

Query: 167 VNIGIGGSDLGPSMAQEALRAYSQHDLNLHFLSDVDGTALLETVRTLPAQETLFIVCSKT 226
           VNIGIGGS LGP M  +ALR++    L +HF+S+VDG  L   +  +    TLFI+ SKT
Sbjct: 121 VNIGIGGSYLGPKMTCQALRSFGHPRLVMHFVSNVDGHDLDALLPRIDPATTLFIIASKT 180

Query: 227 FTTLETLTNAQAARQWLVQQLGDEAAVARHFVGVTSNIEEASRFGIDPTNMFGFWDWVGG 286
           F T ET+TNA++AR WL++   + + + +HFV V++ ++  + FGI   NMF FWDWVGG
Sbjct: 181 FGTSETMTNARSARAWLLRST-NASQLPKHFVAVSTQLDLVTEFGIAAENMFPFWDWVGG 239

Query: 287 RYSMTSAIGLSTMIAIGAQHFRQLLAGFHAMDEHFRTTPLEANLPVILGMLTVWYTNFFG 346
           RYS+ SAIGL+ ++ IG   FR+ LAG HAMD+HF+ TPLE NLPVIL ++ +W  NF G
Sbjct: 240 RYSVWSAIGLALVMYIGMDRFREFLAGAHAMDQHFQHTPLEKNLPVILALIGIWNRNFIG 299

Query: 347 ARSQAVLPYSQSLKRLPAYLQQLTMESNGKQVTRQGQSVHYQTSPVYWGDNGINGQHSFY 406
           + S ++ PY Q L+  P YLQQL MESNGK++   G  V   T PV WGD G NGQH+++
Sbjct: 300 STSISIAPYHQDLRLFPGYLQQLEMESNGKRIKVDGSKVEVATCPVIWGDVGTNGQHAYF 359

Query: 407 QLLHQGTQMVPCDFIGFCRPVQALGQQHALLMANMFAQSEALAFGKTAQQVRQE------ 460
           QLLHQGT +   DFI   +P   L     LL+AN FAQSEA   G+ A +VR +      
Sbjct: 360 QLLHQGTDVAVVDFIAALQPSHTLESHQLLLLANCFAQSEAFMRGRNADEVRADLQGQGL 419

Query: 461 --GSSEELTPHRVFPGNRPSNSLLIDQLTPYSLGTLVALYEHSVFTQGVIWDIDSFDQWG 518
                E+L PHR FPGNRPSN++L+D LTP +LG L+ALYEH VF QGVIW I+SFDQWG
Sbjct: 420 PPEEVEKLIPHRSFPGNRPSNTILMDALTPGTLGALIALYEHKVFVQGVIWGINSFDQWG 479

Query: 519 VELGKQLARRTARELIDHAQPLHHDSSTNALIHRYRAR 556
           VELGK LA+  A+EL + A+P  HDSSTN LI R R +
Sbjct: 480 VELGKLLAKNIAQELAEQARPAQHDSSTNGLIARAREK 517


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,015,657
Number of extensions: 39983
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 478
Effective length of database: 713,682
Effective search space: 341139996
Effective search space used: 341139996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)