BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2111.p (393 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093842|ref|YP_001098917.1| hypothetical protein HEAR0589 [... 203 1e-53 gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein... 109 2e-25 gi|134094165|ref|YP_001099240.1| putative sensor/regulator prote... 106 2e-24 gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [... 105 5e-24 gi|134096466|ref|YP_001101541.1| putative signal peptide [Hermin... 100 9e-23 >gi|134093842|ref|YP_001098917.1| hypothetical protein HEAR0589 [Herminiimonas arsenicoxydans] Length = 361 Score = 203 bits (516), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 123/370 (33%), Positives = 201/370 (54%), Gaps = 14/370 (3%) Query: 21 MAGLFLNMPREHCTRQWALSGGLSASGICIMVAGYAGLGGAWNPLLLLMGNTSLFAGCLT 80 MAG+F P + CTR WA+SG A G+ I + +LL G + AG + Sbjct: 1 MAGVFFAAPTDKCTRYWAISGSYIALGVLIAILN----NRLPRAFVLLSGTGLIIAGLIY 56 Query: 81 AWSGLRSFYQRRTGRWPVLMVGVY-AFLFSLLLLYRVSFTNRAYLAMFALQVVFWLVLIE 139 W G+ FY+++ +W G++ AFL +L +L V T ++++ + L L Sbjct: 57 QWHGILVFYKKQPKKWGW---GIFTAFLLTLAVLLYVDATAAQRSILYSVTTLALLGL-S 112 Query: 140 FVRGMSGPGGRRYGGWTFGRCIGIFSLFIFITTHLVRF--VLSFSQPELFIPPAMSTIGV 197 F G GG TF + + ++ + + +++++ +++ +T V Sbjct: 113 FQAIWQGQGG---SPRTFVQRLVQGAIVLLMVSYVLKIGIAVTYISEGRMTTILSTTPEV 169 Query: 198 ALIYMIPLCGSLLFSVSLMMIYFERLLADKQRLATEDELTGTLNRRELVRCGELALAQAV 257 + Y+IP G++LFS+ L+++YFER + + + LAT DEL+ NRR +V GE L ++ Sbjct: 170 IVTYLIPTVGTVLFSIGLLLLYFERTVEENRHLATHDELSKLFNRRAIVAAGERELYLSI 229 Query: 258 QTRQRLTLAFIDVDHFKLINDTHGHLAGDRVLADIGILLRKHCAQGGLIGRYGGEEFCAV 317 + ++ L +AFID+D FK ND GH AGD V+A++ +L++ C ++GRYGGEEF + Sbjct: 230 RLQRDLAIAFIDIDLFKRFNDEFGHAAGDTVIAEVAAVLQQTCRSIDMVGRYGGEEFLVI 289 Query: 318 FPGWSEEQARASAQHLLETVRNHVFVHGQEVTISVGLAVLQPGQVMSWDQLVHEADQALY 377 PG + A Q L+E +R + F+ VTIS+G+A+L SW QL+ AD ALY Sbjct: 290 LPGVDSQSAVQIGQRLVEAMREYRFLGIHPVTISIGMAILPRNAECSWAQLLRRADAALY 349 Query: 378 RAKSEGRNAF 387 AK+ GR+ + Sbjct: 350 EAKNMGRDRY 359 >gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] Length = 519 Score = 109 bits (273), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/196 (37%), Positives = 100/196 (51%), Gaps = 6/196 (3%) Query: 196 GVALIYMIPLCGSLLFSVSLMMIYFERLLADKQRLATEDELTGTLNRRELVRCGELALAQ 255 G L++ I + + ER + LA D LTG NRR + A+ Sbjct: 312 GARLVHQITVRERAQSELRTARDDLERSNGELAALALLDSLTGLANRRRFDAALDDEFAR 371 Query: 256 AVQTRQRLTLAFIDVDHFKLINDTHGHLAGDRVLADIGILLRKHCAQ-GGLIGRYGGEEF 314 A++ + L L +DVDHFK ND +GH GD L +I +L+ A+ G L+ RYGGEEF Sbjct: 372 AMRNQTSLALIMLDVDHFKKYNDRYGHPQGDECLKEISKILKTATARTGDLVARYGGEEF 431 Query: 315 CAVFPGWSEEQARASAQHLLETVRNHVFVHGQE----VTISVGLAVLQPG-QVMSWDQLV 369 + PG A A A+ + ++ H + VT S+G+A L P Q S QLV Sbjct: 432 VILLPGTDRAGAAAVAERVRLAIQALNMEHAETPDGIVTASLGIAALIPQRQQNSPQQLV 491 Query: 370 HEADQALYRAKSEGRN 385 H ADQALY+AK +GRN Sbjct: 492 HAADQALYKAKEDGRN 507 >gi|134094165|ref|YP_001099240.1| putative sensor/regulator protein [Herminiimonas arsenicoxydans] Length = 818 Score = 106 bits (264), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 109/206 (52%), Gaps = 10/206 (4%) Query: 185 ELFIPPAMSTIGVALIYMIPLCGSLLFSVSLMMIYFERLLADKQRLATEDELTGTLNRRE 244 EL+I P T G A+ + + +L+ V+ + Y E D + A D LTG NR Sbjct: 351 ELYIAPVSDTSGGAVGHFV----GVLYDVTQIKRYQE----DLEHQANYDTLTGLANRNL 402 Query: 245 LVRCGELALAQAVQTRQRLTLAFIDVDHFKLINDTHGHLAGDRVLADIGILLRKHCAQGG 304 L + AL QA + L+L FID+D+FKL+ND+ GH AGD ++A++G L+ G Sbjct: 403 LNERTQQALLQARRHDHFLSLVFIDLDNFKLVNDSMGHGAGDELIANVGSRLQTCVRDGD 462 Query: 305 LIGRYGGEEFCAVFPGWSEEQARASA-QHLLETVRNHVFVHGQEVTISVGLAVLQ-PGQV 362 + R GG+EF + S + A Q + + +++ GQE+ ++ + V + P Sbjct: 463 TVARIGGDEFVLLLTNQSVSDSNAGVMQRIQAELIKPMWIRGQEIVVTCSMGVARFPEDG 522 Query: 363 MSWDQLVHEADQALYRAKSEGRNAFR 388 + L+ AD A+YRAKS GRN F+ Sbjct: 523 EDSESLLANADTAMYRAKSSGRNNFQ 548 >gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [Herminiimonas arsenicoxydans] Length = 859 Score = 105 bits (261), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 63/163 (38%), Positives = 90/163 (55%), Gaps = 3/163 (1%) Query: 228 QRLATEDELTGTLNRRELVRCGELALAQAVQTRQRLTLAFIDVDHFKLINDTHGHLAGDR 287 + LA D LTG NR L + AL A + + L + F+D+DHFK INDT GH GD Sbjct: 429 ESLAHFDVLTGLPNRALLDERAQRALRLAEEDQATLAVMFLDLDHFKNINDTLGHNLGDT 488 Query: 288 VLADIGILLRKHCAQGGLIGRYGGEEFCAVFPGWSEEQARASAQHLLETVRNHVFVHGQE 347 +L ++ LR + + R GG+EF + PG + E A+ AQ L+ + + E Sbjct: 489 LLVELAQRLRAVLRRDDTLSRLGGDEFVLLLPGANRESAKKIAQELMRAINEPYRIGSHE 548 Query: 348 VTI--SVGLAVLQPGQVMSWDQLVHEADQALYRAKSEGRNAFR 388 + + S+G+AV P M ++ L AD A+YRAK EGRNA+R Sbjct: 549 LNVMASIGIAVY-PADGMDFETLCKNADVAMYRAKQEGRNAYR 590 >gi|134096466|ref|YP_001101541.1| putative signal peptide [Herminiimonas arsenicoxydans] Length = 492 Score = 100 bits (250), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 60/163 (36%), Positives = 90/163 (55%), Gaps = 9/163 (5%) Query: 228 QRLATEDELTGTLNRRELVRCGELALAQAV--QTRQRLTLAFI--DVDHFKLINDTHGHL 283 +++A D LTG LNR+ E+ QA+ R+R+ L+ I D+D FK++ND HGHL Sbjct: 320 EQIAGTDTLTGLLNRQAF----EIVFQQAILDSERRRIPLSAILFDIDFFKMVNDNHGHL 375 Query: 284 AGDRVLADIGILLRKHCAQGGLIGRYGGEEFCAVFPGWSEEQARASAQHLLETVRNHVF- 342 AGDR+L I + + + ++ R+GGEEF + EQA A A+ + + H F Sbjct: 376 AGDRILQSIAAITKNAVRESDIVTRWGGEEFLVLLKDCPLEQATALAEKIRSMIAGHDFE 435 Query: 343 VHGQEVTISVGLAVLQPGQVMSWDQLVHEADQALYRAKSEGRN 385 + + ++V L V + +W AD ALY+AKSEGRN Sbjct: 436 LPASALHLTVSLGVAEYAYRETWLSFFGRADTALYQAKSEGRN 478 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.329 0.141 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 693,314 Number of extensions: 27513 Number of successful extensions: 153 Number of sequences better than 1.0e-08: 31 Number of HSP's gapped: 117 Number of HSP's successfully gapped: 31 Length of query: 393 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 309 Effective length of database: 723,567 Effective search space: 223582203 Effective search space used: 223582203 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)