BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2110.p (313 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094120|ref|YP_001099195.1| putative transcriptional regula... 87 1e-18 gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg... 84 7e-18 gi|134093581|ref|YP_001098656.1| LysR family transcriptional reg... 84 8e-18 gi|134093619|ref|YP_001098694.1| putative transcriptional regula... 84 1e-17 gi|134095507|ref|YP_001100582.1| putative transcriptional regula... 71 6e-14 >gi|134094120|ref|YP_001099195.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 284 Score = 87.0 bits (214), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 49/141 (34%), Positives = 82/141 (58%), Gaps = 2/141 (1%) Query: 6 LRYFVAIVDHGSLSRAARVLHIAQPALTQQIRQLEDEMAAQLLHRSAQGVIATDAGKVFY 65 LR FVA+VD GS +RAA +H+ Q ++QQIR+LE ++ LL+RS + V T G+ Sbjct: 7 LRSFVAVVDTGSFTRAADSVHLTQSTISQQIRRLEMQVGCDLLNRSGRYVTTTLEGERLL 66 Query: 66 EHALAILKQVQDAKQAVAQSTDKPAGTVALGIPQSVSNALALPLLNAVRSTYPDITLQLT 125 +A I + + +A + +AQS K G V LG+P+ P L+A TY + L+++ Sbjct: 67 RYAHRIAQLMDEAMEQIAQSAGK--GEVRLGVPEDFVGRALTPTLSAFIDTYSAVRLEVS 124 Query: 126 EELTGNLITQLKSGRINLAVL 146 ++ L + + G ++LA++ Sbjct: 125 SGMSHELWQRFQRGELDLALI 145 >gi|134093979|ref|YP_001099054.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 297 Score = 84.3 bits (207), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 94/198 (47%), Gaps = 4/198 (2%) Query: 1 MELRQLRYFVAIVDHGSLSRAARVLHIAQPALTQQIRQLEDEMAAQLLHRSAQGVIATDA 60 +ELRQLRYFV + + RAA LH+ QP L+Q I+ LE + QL R+++ V T A Sbjct: 3 IELRQLRYFVTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALTPA 62 Query: 61 GKVFYEHALAILKQVQDAKQAVAQSTDKPAGTVALGIPQSVSNALALPLLNAVRSTYPDI 120 G A IL+Q + + T +G ++L + ++ P L R +YP + Sbjct: 63 GSALLPEAQRILQQTAALPDLMRRVTSGASGRLSLAFVSTADYSVLPPFLREFRESYPGV 122 Query: 121 TLQLTEELTGNLITQLKSGRINLAVL---FDDGQLASFAATPMIEEEMMYITRAKSQYGV 177 + L E T + L GRI++ +L D P++ E ++ + K + Sbjct: 123 EIDLREATTDVQLDDLMQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLI-LAAPKGLKAL 181 Query: 178 SGRRRVPLTLALQAPLIL 195 G++ V L + PLI+ Sbjct: 182 KGKQSVALQSLAELPLII 199 >gi|134093581|ref|YP_001098656.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 315 Score = 84.0 bits (206), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 67/255 (26%), Positives = 112/255 (43%), Gaps = 16/255 (6%) Query: 1 MELRQLRYFVAIVDHGSLSRAARVLHIAQPALTQQIRQLEDEMAAQLLHRSAQGVIATDA 60 M L +L+Y VA+ AA H+AQP L+ I++LEDE+ L R + T Sbjct: 1 MTLTELKYIVAVAREKHFGHAAEACHVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 60 Query: 61 GKVFYEHALAILKQVQDAKQAVAQSTDKPAGTVALGIPQSVSNALALPLLNAVRSTYPDI 120 G A +L+Q K+ Q+ D G LGI +++ L PL+ A+ P + Sbjct: 61 GVQIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKAMIERVPQM 120 Query: 121 TLQLTEELTGNLITQLKSGRINLAV----LFDDGQLASFAATPMIEEEMMYITRAKSQYG 176 L L E T L+ QL+ G I+ A+ + D G L P+ +E ++ + Sbjct: 121 PLVLQENFTVKLLEQLRQGEIDAAIVALPIPDQGLLVQ----PVYDEP--FVVAVPKHHP 174 Query: 177 VSGRRRVPLTLALQAPLILPGLAHGVRPRIEQLV------RSQGMSLENVIEINSVAILK 230 + R V ++L G H R ++ ++ + G + E +S+ ++ Sbjct: 175 WAERSSVTTDNLKSETMLLLGNGHCFRDQVLEVCPEMSRFSTSGDGIARTFEGSSLETIR 234 Query: 231 SAILADIGATILPVA 245 + + IG T+LP A Sbjct: 235 HMVASGIGITVLPQA 249 >gi|134093619|ref|YP_001098694.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 367 Score = 83.6 bits (205), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/296 (22%), Positives = 128/296 (43%), Gaps = 13/296 (4%) Query: 3 LRQLRYFVAIVDHGSLSRAARVLHIAQPALTQQIRQLEDEMAAQLLHRSAQGVIATDAGK 62 LRQL+ F + S SRAA LH+ QPA++ Q+++LED L + + + T G Sbjct: 50 LRQLKVFETVARLLSFSRAAEELHLTQPAVSTQVKKLEDHAGLALFEQLGKKIYLTPGGT 109 Query: 63 VFYEHALAILKQVQDAKQAVAQSTDKPAGTVALGIPQSVSNALALPLLNAVRSTYPDITL 122 ++ I++Q Q+A+ A+ Q G + + + + L+ RS + +TL Sbjct: 110 ELLHYSRTIIQQFQEAEDAMTQFKGITGGKLNVAVISAGDYFFPRLLVEFARS-HQGVTL 168 Query: 123 QLTEELTGNLITQLKSGRINLAVLFD-----DGQLASFAATPMIEEEMMYITRAKSQYGV 177 L+ L+ QL + +LA++ D FA P Y+ A + + Sbjct: 169 NLSVHNREGLLNQLANNLTDLAIMVRPPTDMDTINEPFAPHP-------YVIVAAPDHHL 221 Query: 178 SGRRRVPLTLALQAPLILPGLAHGVRPRIEQLVRSQGMSLENVIEINSVAILKSAILADI 237 ++ +P++ + P ++ +E S+ L +EI S +K A++A + Sbjct: 222 VSKKNIPMSTLIHEPFVVREKGSDTWHSMEDGFGSRIDDLNIAMEIKSTETIKQAVIAGM 281 Query: 238 GATILPVAPLLADIERGEMVAHPIAGEPISRTLALCASRNIPLTTAAAAVERLVLD 293 G + L + +++ G + + G P+ + +N L A A +L+ Sbjct: 282 GISFLSAHTISMELQAGSLTVLDVEGFPVMLNWYVVHRKNKRLPPVAQAFRNFLLN 337 >gi|134095507|ref|YP_001100582.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 71.2 bits (173), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 66/119 (55%) Query: 6 LRYFVAIVDHGSLSRAARVLHIAQPALTQQIRQLEDEMAAQLLHRSAQGVIATDAGKVFY 65 ++ FVA+V+ S + A L I++ +++ + LED + +LL+R+ + + T++G +Y Sbjct: 1 MKTFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYY 60 Query: 66 EHALAILKQVQDAKQAVAQSTDKPAGTVALGIPQSVSNALALPLLNAVRSTYPDITLQL 124 E L IL V +A+Q AQS P GT+ + +P S PLL YP++ L + Sbjct: 61 ERCLQILADVDEAEQVAAQSAAMPRGTLKVAMPVSFGTVRIAPLLTEYMRRYPEVRLDI 119 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.133 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 534,955 Number of extensions: 19696 Number of successful extensions: 120 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 124 Number of HSP's successfully gapped: 15 Length of query: 313 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 231 Effective length of database: 730,157 Effective search space: 168666267 Effective search space used: 168666267 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)