BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2106.p (477 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095838|ref|YP_001100913.1| succinate-semialdehyde dehydrog... 249 2e-67 gi|134096568|ref|YP_001101643.1| methylmalonate-semialdehyde deh... 171 9e-44 gi|134095327|ref|YP_001100402.1| multifunctional: transcriptiona... 170 1e-43 >gi|134095838|ref|YP_001100913.1| succinate-semialdehyde dehydrogenase I, NADP-dependent [Herminiimonas arsenicoxydans] Length = 492 Score = 249 bits (636), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 154/458 (33%), Positives = 246/458 (53%), Gaps = 12/458 (2%) Query: 5 FIDNRWVAPASGQSIPVIDPSDGQVFAAIARGNADDVERAVQAARLAYEGAWGKLSAAER 64 +ID W A+ I +P+DG + + A++ E A++AA+ A+ AW + ER Sbjct: 22 YIDGTWAGAATNFDIS--NPADGSIIGSAPNMGAEETETAIRAAQSAFP-AWAAKTGKER 78 Query: 65 SRLLMKLAYKLQDHQEELAQLEGRDCGKPMKQARADAAAIVRYFEFYAGAADKLHGHTIP 124 + ++ + + + ++LA L + GKP+ ++R + + E+++ A ++ G + Sbjct: 79 AIIMRQWFDLIIANVDDLAILMTAEQGKPLIESRGEVIYGASFIEWFSEEAKRVSGDVMA 138 Query: 125 YQAG-YTVLTLREPHGVTAHIVPWNYPMQIFGRCVGGALAAGNTCVVKPAEDACLSILRV 183 LT+++P G+ A I PWN+P+ + R V A+AAG T V+KPAE LS L + Sbjct: 139 STWNDKRTLTIKQPIGICAAITPWNFPIAMITRKVAPAVAAGCTIVIKPAEQTPLSALAI 198 Query: 184 AELAAEVGFPAGALNIVTGYGHEA---GDLLVKHPDVDHVSFTGSPNVGKLVVRGAAEHH 240 AELA G PAG +N++T + G L P V HVSFTGS VG++++ A Sbjct: 199 AELAHRAGLPAGVINVITADAENSIVVGKTLCASPIVRHVSFTGSTPVGRILMEQCAPTV 258 Query: 241 TPVTLELGGKSPQVVFEDADMEAMLPVVVNAIVQNAGQTCSAGSRLLVQRGAYEQVLERL 300 + LELGG +P +VF+DAD++A + + + +NAGQTC +R V Y+ +++L Sbjct: 259 KKIALELGGHAPFIVFDDADLDAAVTGALQSKYRNAGQTCVCTNRFYVHESIYDVFVQKL 318 Query: 301 AGLFSQLKVGSS-QMDLDCGPLIRKTQQERVAGFLAEARRDGIPLVAQGEIAAGVPANGF 359 A +++KVG+ + + GPLI +V +++A + G ++ G+ A G Sbjct: 319 AAGAARIKVGNGFEQGVLQGPLIDDQAIRKVEQHVSDAVKKGASVMTGGKKHA---LGGH 375 Query: 360 YQAPALLRDVPPRHRLAQEEVFGPVLAAMPFEDEAHAIALANGTDYGLVASVWTRDGGRQ 419 + P +L ++ + EE FGPV A + F+ E AIA AN TD+GL + + RD R Sbjct: 376 FYEPTVLSNITDDMSIMHEETFGPVAAIVKFKTEDEAIAAANNTDFGLASYFYARDISRV 435 Query: 420 MRLARAIRSGQVFINNYGAGGGVELPFGGVKASGHGRE 457 R+A + G V IN G PFGGVK SG GRE Sbjct: 436 WRVAEKLEYGMVGINT-GLISNEVAPFGGVKQSGLGRE 472 >gi|134096568|ref|YP_001101643.1| methylmalonate-semialdehyde dehydrogenase, oxidoreductase protein [Herminiimonas arsenicoxydans] Length = 506 Score = 171 bits (432), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 138/489 (28%), Positives = 227/489 (46%), Gaps = 25/489 (5%) Query: 3 QHFIDNRWVAPASGQSIPVIDPSDGQVFAAIARGNADDVERAVQAARLAYEGAWGKLSAA 62 +H+I+ G PV +P+ G++ A + + DV+ AV AA+ A +++ Sbjct: 10 EHYINGNLTNTVGGGQQPVFNPATGEISANVVLASDADVQTAVAAAKAAAPAW-AEMAPL 68 Query: 63 ERSRLLMKLAYKLQDHQEELAQLEGRDCGKPMKQARADAAAIVRYFEFYAGAADKLHGH- 121 +R+R+L K ++ H +LA R+ GK A+ + + EF G L Sbjct: 69 KRARILFKFKDLIERHHNDLAAAITREHGKVFSDAKGEVTRGLEVVEFACGVPQLLKTQF 128 Query: 122 TIPYQAGYTVLTLREPHGVTAHIVPWNYPMQIFGRCVGGALAAGNTCVVKPAEDACLSIL 181 + G LR+P GVTA I P+N+P + ALA GNT ++KP+E L Sbjct: 129 SDNIGGGIDNWNLRQPLGVTAGITPFNFPFMVPMWMAPVALATGNTFILKPSERDPSPSL 188 Query: 182 RVAELAAEVGFPAGALNIVTGYGHEAGDLLVKHPDVDHVSFTGSPNVGKLVVRGAAEHHT 241 VAEL + G P G N++ G A D L++HPD+ VSF GS + + + + A Sbjct: 189 MVAELLHQAGLPDGVFNVLQG-DKRAVDGLLQHPDIKAVSFVGSTPIAEYIYQAGAARKG 247 Query: 242 PVTLEL----GGKSPQVVFEDADMEAMLPVVVNAIVQNAGQTCSAGSRLLVQRGAYEQVL 297 L + G K+ VV DA++E + ++ A +AG+ C A S + ++++ Sbjct: 248 SYPLRVQALGGAKNHLVVMPDANLEQAVDALIGAAYGSAGERCMAISVAVAVGSVADKLV 307 Query: 298 ERLAGLFSQLKVGSS-QMDLDCGPLIRKTQQERVAGFLAEARRDGIPLVAQGE-IAAGVP 355 L LKV + + D + GP++ + ++ G++ + G L+ G + Sbjct: 308 AALIPRVKSLKVKNGMESDAEMGPVVSAAHKAKIEGYIEAGIKSGAKLLVDGRGLTVDGH 367 Query: 356 ANGFYQAPALLRDVPPRHRLAQEEVFGPVLAAMPFEDEAHAIALANGTDYGLVASVWTRD 415 +NGF+ L +V P + QEE+FGPVL + D + A+ L N ++G +++T D Sbjct: 368 SNGFFLGGCLFDNVTPEMTIYQEEIFGPVLCVVRVPDFSAALDLINAHEFGNGVALFTSD 427 Query: 416 GGRQMRLARAIRSGQVFINNYGAGGGVELP-------FGGVKASGHGREKGF--EALYGF 466 G +R + G V IN V +P FGG K S G + E + + Sbjct: 428 GNTAREFSRRVEIGMVGIN-------VPIPVPMAWHSFGGWKRSMFGDTHAYGEEGIKFY 480 Query: 467 TVLKTIAIR 475 T K+I R Sbjct: 481 TRYKSIMQR 489 >gi|134095327|ref|YP_001100402.1| multifunctional: transcriptional repressor of proline utilization; proline dehydrogenase; pyrroline-5-carboxylate dehydrogenase [Herminiimonas arsenicoxydans] Length = 1224 Score = 170 bits (431), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 139/461 (30%), Positives = 208/461 (45%), Gaps = 37/461 (8%) Query: 14 ASGQSIPVI-DPSD-GQVFAAIARGNADDVERAVQAARLAYEGA--WGKLSAAERSRLLM 69 AS ++ ++ +P+D V NADDVERA+ LA GA W K + +ER+ +L+ Sbjct: 574 ASSTTVAIMRNPADHSDVLGTAVEANADDVERALA---LAIAGAEKWQKTAPSERAGILL 630 Query: 70 KLAYKLQDHQEELAQLEGRDCGKPMKQARADAAAIVRYFEFYAGAADKLHGHTIPYQAGY 129 A Q H E L R+ GK + A + + + +Y+ A Sbjct: 631 NAAELFQQHAPEFIALSVREAGKTLPNAIGELRETIDFLRYYS--------------AQI 676 Query: 130 TVLTLREPHGVTAHIVPWNYPMQIFGRCVGGALAAGNTCVVKPAEDACLSILRVAELAAE 189 T + + G+ A I PWN+P+ IF + ALAAGN + KPAE L R +L + Sbjct: 677 TTAQMEQALGLVACISPWNFPLSIFTGQLSAALAAGNAVLAKPAEQTPLIAFRAVQLMHQ 736 Query: 190 VGFPAGALNIVTGYGHEAGDLLVKHPDVDHVSFTGSPNVGKLVVRGAAEHH------TPV 243 G P L + G G G LV V V FTGS V ++ R A+ P+ Sbjct: 737 AGVPEDVLLFLPGRGQTTGAQLVADARVSGVVFTGSTQVATIIHRTLAQRSMAERRDIPL 796 Query: 244 TLELGGKSPQVVFEDADMEAMLPVVVNAIVQNAGQTCSAGSRLLVQRGAYEQVLERLAGL 303 E GG++ +V A E ++ V+ + +AGQ CSA L +Q E+ L L G Sbjct: 797 IAETGGQNAMIVDSSALCEQVVRDVIASAFDSAGQRCSALRVLCLQTDIAEKTLNMLHGA 856 Query: 304 FSQLKVGS-SQMDLDCGPLIRKTQQERVAGFLAEARRDGIPLVAQGEIAAGVPANGFYQA 362 F +L+ G Q+ D GP+I Q+ + ++ +A R + + G G + A Sbjct: 857 FEELQTGRPDQLATDVGPVIDAEAQQHLRAYIEQAGRRAKNMKQLALPSTGT--QGTFVA 914 Query: 363 PALLRDVPPRHRLAQEEVFGPVLAAMPF--EDEAHAIALANGTDYGLVASVWTRDGGRQM 420 P ++ R Q EVFGPVL + + +D + N T +GL V +R Sbjct: 915 PCIIE--IDRMSDLQREVFGPVLHVLRYRRDDLPQLVRDINATGFGLTLGVHSRIDETIN 972 Query: 421 RLARAIRSGQVFINN--YGAGGGVELPFGGVKASGHGREKG 459 + R G +++N GA GV+ PFGG SG G + G Sbjct: 973 YIVDHARVGNIYVNRNIIGAVVGVQ-PFGGEGLSGTGPKAG 1012 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,002,633 Number of extensions: 44975 Number of successful extensions: 142 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 125 Number of HSP's successfully gapped: 3 Length of query: 477 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 392 Effective length of database: 720,272 Effective search space: 282346624 Effective search space used: 282346624 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)