BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2105.p (252 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 118 3e-28 gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein... 106 1e-24 gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrog... 106 1e-24 gi|134094008|ref|YP_001099083.1| short chain dehydrogenase [Herm... 105 2e-24 gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein... 85 3e-18 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 118 bits (295), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 121/249 (48%), Gaps = 9/249 (3%) Query: 1 MRLQDKVAIVTGGGSGFGEGIAKAYAREGAAVVVADIGQTGGLRVVEEIQAGGGKAIFAK 60 + L +VA+VTG G G IA+A A++G V+ ++G + E + G + Sbjct: 4 VELAGQVALVTGASRGIGRAIAQALAKQGVKVIGTATSESGAAAISEYLAESGKGVVL-- 61 Query: 61 ADVSKRADMDQLLATALEHFGKLDIVVNNAGTTHRNRPMLEVEEEEFDRVYAVNVKSIFL 120 DV+ A L+ + FG + I+VNNAG T M +++EE+D V A N+ S+ Sbjct: 62 -DVNDAARSVALIDEIQKEFGTVTILVNNAGITQDQLAM-RMKDEEWDSVIATNLTSVGR 119 Query: 121 SAKTFVPYFRQVGGGTFVNIASTAGIRPRPGLTWYNGSKGAVITTSKSMAAELGPDKIRV 180 ++ + + G +NI S G G Y +K V S+++A E+G I V Sbjct: 120 LSRAVLRGMMKAKHGRIINITSVVGSTGNAGQMNYAAAKAGVAGMSRALAREIGSRNITV 179 Query: 181 NCVNPVISATGLLAEFMGVPDTPENRKKFVATIPMGRFSTPEDIANACLYLGSDEAQFVT 240 NCV P G + M + + + +P+GR PEDIA A +L S +A ++T Sbjct: 180 NCVAP-----GFIDTDMTKTLSEQQISALLQQVPLGRLGVPEDIAAAVSFLASPQASYIT 234 Query: 241 GVCIEVDGG 249 G + V+GG Sbjct: 235 GTTLHVNGG 243 >gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 246 Score = 106 bits (265), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 120/247 (48%), Gaps = 8/247 (3%) Query: 6 KVAIVTGGGSGFGEGIAKAYAREGAAVVVA-DIGQTGGLRVVEEIQAGGGKAIFAKADVS 64 ++A+VTGG G GE I A G VV T + ++A G DVS Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTTYSPSNTTAGEWLATMKASGYDFRAYPCDVS 62 Query: 65 KRADMDQLLATALEHFGKLDIVVNNAGTTHRNRPMLEVEEEEFDRVYAVNVKSIFLSAKT 124 Q +A + G++D++VNNAG T R+ ++E+ ++D V N+ S+F K Sbjct: 63 DYDSAQQCVALIKKEIGEIDVLVNNAGIT-RDMTFKKMEKTDWDAVMGTNLDSVFNMTKP 121 Query: 125 FVPYFRQVGGGTFVNIASTAGIRPRPGLTWYNGSKGAVITTSKSMAAELGPDKIRVNCVN 184 + G G +NI+S + G T Y+ +K + +K++A E+ + VN ++ Sbjct: 122 VCDGMVERGWGRIINISSVNAQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNTIS 181 Query: 185 PVISATGLLAEF-MGVPDTPENRKKFVATIPMGRFSTPEDIANACLYLGSDEAQFVTGVC 243 P T ++ V DT K V IPMGR PE++A YL SDEA FVTG Sbjct: 182 PGYIGTKMVTAIPQDVLDT-----KIVPQIPMGRLGKPEEVAGLVAYLASDEAAFVTGAN 236 Query: 244 IEVDGGR 250 I ++GG+ Sbjct: 237 IAINGGQ 243 >gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 106 bits (264), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/259 (29%), Positives = 130/259 (50%), Gaps = 16/259 (6%) Query: 3 LQDKVAIVTGGGSGFGEGIAKAYAREGAAVVVADIGQTGGLRVVEE--IQAGGGKAIFAK 60 LQ K A++TG SG G GIA+A A++GA +V+ G + ++ Q G ++ + Sbjct: 6 LQGKTALITGSTSGIGLGIARALAQQGAHIVLNGFGDANEIAALQAGLTQDYGVQSTYHP 65 Query: 61 ADVSKRADMDQLLATALEHFGKLDIVVNNAGTTHRNRPMLEVEE---EEFDRVYAVNVKS 117 AD+S+ ++ ++ A FG +DI+VNNAG H + ++E+ E++D + A+N+ S Sbjct: 66 ADMSRPQEIAAMMQFAAAKFGSVDILVNNAGIQH----VADIEDFPVEKWDAIIAINLSS 121 Query: 118 IFLSAKTFVPYFRQVGGGTFVNIASTAGIRPRPGLTWYNGSKGAVITTSKSMAAELGPDK 177 F + + +P ++ G +NIAS G+ + Y +K ++ SK A E Sbjct: 122 AFHTTRLALPAMKEKNWGRIINIASAHGLVGSAQKSAYVAAKHGIVGLSKVTALENAQTG 181 Query: 178 IRVNCVNPVISATGLLAEFMGVPDTPEN------RKKFVA-TIPMGRFSTPEDIANACLY 230 + N + P T L+ + + V E+ +K +A P G F TPE + ++ Sbjct: 182 VTCNAICPGWVLTPLVQKQVDVRAANEDVSNDDAKKGLLAEKQPSGEFVTPEQLGALAVF 241 Query: 231 LGSDEAQFVTGVCIEVDGG 249 L S+ A V G +DGG Sbjct: 242 LCSEAANQVRGAAWSMDGG 260 >gi|134094008|ref|YP_001099083.1| short chain dehydrogenase [Herminiimonas arsenicoxydans] Length = 249 Score = 105 bits (262), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 124/253 (49%), Gaps = 9/253 (3%) Query: 3 LQDKVAIVTGGGSGFGEGIAKAYAREGAAVVVADI-GQTGGLRVVEEIQAGGGKAIFAKA 61 + KV IVTGG G G IAK A +G AV ++ + +T +V+ I+ GG A+ A Sbjct: 1 MSKKVMIVTGGSRGIGAEIAKLGAIDGYAVCISYLHNKTAADAIVDLIRLTGGTAMAVAA 60 Query: 62 DVSKRADMDQLLATALEHFGKLDIVVNNAGTTHRNRPMLEVEEEEFDRVYAVNVKSIFLS 121 D++ AD+ ++ T G L +VNNAG + + +++ R++ N+ FL Sbjct: 61 DMAVEADILRMFETVDRELGPLTALVNNAGILEQQMRVDQMDAARMQRIFTTNIVGSFLC 120 Query: 122 AKTFVPYFRQV---GGGTFVNIASTAGIRPRPG-LTWYNGSKGAVITTSKSMAAELGPDK 177 A+ V + GG VN++S A PG Y SKGA+ T + +A E+ + Sbjct: 121 AREAVRRMSTLHGGAGGAIVNVSSVAARTGGPGEYVDYAASKGAIDTLTIGLAKEVATEG 180 Query: 178 IRVNCVNPVISATGLLAEFMGVPDTPENRKKFVATIPMGRFSTPEDIANACLYLGSDEAQ 237 IRVN V P + + E P + +PM R ++A A L+L SD+A Sbjct: 181 IRVNAVRPGV----IYTEIHASGGEPGRVDRVKGNVPMQRGGEANEVAQAVLWLLSDKAS 236 Query: 238 FVTGVCIEVDGGR 250 + TG ++V GGR Sbjct: 237 YTTGTLLDVTGGR 249 >gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 240 Score = 84.7 bits (208), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 111/245 (45%), Gaps = 10/245 (4%) Query: 6 KVAIVTGGGSGFGEGIAKAYAREGAAVVVADIGQTGGLRVVEEIQAGGGKAIFAKADVSK 65 K A+V+GG G G IA G AV V E + +F DVS Sbjct: 3 KTALVSGGTRGLGAAIAIYLRSAGYAVAVT---YHHNADTAAEFRKNTSIPVFCW-DVSD 58 Query: 66 RADMDQLLATALEHFGKLDIVVNNAGTTHRNRPMLEVEEEEFDRVYAVNVKSIFLSAKTF 125 A + + G +DI+VNNAG T R+ + + ++ V N+ S+F ++ Sbjct: 59 YAQCQEGIRQVELDVGPIDILVNNAGIT-RDAVLHHMTPGQWIEVINTNLGSVFNMSRNV 117 Query: 126 VPYFRQVGGGTFVNIASTAGIRPRPGLTWYNGSKGAVITTSKSMAAELGPDKIRVNCVNP 185 + R+ G +NI+S G R + G Y +K + +KS+A E I VN + P Sbjct: 118 IEGMRERNFGRIINISSVNGERGQIGQANYAAAKAGIFGFTKSLALESARKNITVNAIAP 177 Query: 186 VISATGLLAEFMGVPDTPENRKKFVATIPMGRFSTPEDIANACLYLGSDEAQFVTGVCIE 245 T +++ +P E +K V IP+G T DIA ++L + + F+TG + Sbjct: 178 GYCDTDMVS---AIPQ--EVLEKIVTGIPVGHLGTGSDIARLVVFLADNASGFITGATFD 232 Query: 246 VDGGR 250 V+GG+ Sbjct: 233 VNGGQ 237 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 498,464 Number of extensions: 21105 Number of successful extensions: 97 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 73 Number of HSP's successfully gapped: 11 Length of query: 252 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 172 Effective length of database: 736,747 Effective search space: 126720484 Effective search space used: 126720484 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)