BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2100.p (238 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096407|ref|YP_001101482.1| high-affinity branched-chain am... 164 3e-42 gi|134095636|ref|YP_001100711.1| high-affinity branched-chain am... 164 5e-42 gi|134095847|ref|YP_001100922.1| high-affinity branched-chain am... 155 2e-39 gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 128 2e-31 gi|134093662|ref|YP_001098737.1| branched-chain amino acid ABC t... 124 4e-30 >gi|134096407|ref|YP_001101482.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 164 bits (415), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 94/233 (40%), Positives = 138/233 (59%), Gaps = 2/233 (0%) Query: 6 SLLRVDRLHAWYGQSHVLHGVSLEVQRGEIVSILGRNGAGRSTLLKALMGLVRSRGG-ID 64 S L V L Y + +VLH VS+EV G+I ILG NGAG+STL+++++GL R G I Sbjct: 2 SNLSVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEIL 61 Query: 65 FDGDDIAGLPTHVIARRGIGYVPESRDVFPTLTVAQNLLLGRR-SGRAPVHGWREEEVYA 123 ++G ++AG TH I GI +PE R VFP ++VA+NL LG + V R VY Sbjct: 62 WNGRNLAGEKTHAIIASGISCIPEGRKVFPRMSVAENLALGAFLVTNSAVVRERLARVYE 121 Query: 124 LFPALARRHKVAAGALSGGEQQMLALGRALLGNPSLLLIDEPTEGLSPQMVEQVAHYLEL 183 +FP L R AG +SGGEQ M+++GR L+ P LL+IDEP+ GLSP V++ + + Sbjct: 122 IFPRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPQLLVIDEPSLGLSPLYVKENFNVIRR 181 Query: 184 LRQRNVAVLLIEQKQAIALELSQRAYVMGRGEMVFHGTPAALQADQDLQREWL 236 + + VLL+EQ L +S YV+ +G ++ GT L ++ D++ + Sbjct: 182 INALGITVLLVEQNARQTLAISHYGYVLSQGRVMAEGTAEELASNDDVRAAYF 234 >gi|134095636|ref|YP_001100711.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 241 Score = 164 bits (414), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 144/238 (60%), Gaps = 6/238 (2%) Query: 4 SDSLLRVDRLHAWYGQSHVLHGVSLEVQRGEIVSILGRNGAGRSTLLKALMGL---VRSR 60 + ++L++ L YG + G+ L+V++GE+++++G NGAG++T LKA+ G R Sbjct: 2 TTTVLKIAGLKVAYGGIQAVKGIDLDVRQGELITLIGANGAGKTTTLKAITGTLPECRVD 61 Query: 61 GGIDFDGDDIAGLPTHVIARRGIGYVPESRDVFPTLTVAQNLLLGRRSGRAPVHGWRE-- 118 G I++ G I GL + + R+ + VPE R VF +++ +NLL+G + R G + Sbjct: 62 GHIEYAGQAIKGLGSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFT-RNDKQGIADDM 120 Query: 119 EEVYALFPALARRHKVAAGALSGGEQQMLALGRALLGNPSLLLIDEPTEGLSPQMVEQVA 178 E+ +A+FP L R AG LSGGEQQMLA+ RAL+ +P LLL+DEP+ GLSP MVE++ Sbjct: 121 EKWFAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPQLLLLDEPSMGLSPIMVEKIF 180 Query: 179 HYLELLRQRNVAVLLIEQKQAIALELSQRAYVMGRGEMVFHGTPAALQADQDLQREWL 236 + + + + +LL+EQ +AL+ + RAYVM G + G + D ++ +L Sbjct: 181 EVIRSVAAQGITILLVEQNARLALQAAHRAYVMESGLITMQGDAQQMLNDPKVREAYL 238 >gi|134095847|ref|YP_001100922.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 243 Score = 155 bits (391), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 92/238 (38%), Positives = 141/238 (59%), Gaps = 5/238 (2%) Query: 4 SDSLLRVDRLHAWYGQSHVLHGVSLEVQRGEIVSILGRNGAGRSTLLKALMGLVR-SRGG 62 S LL+V+ L YG G+S+EV GE V ++G NGAG+S+ LKA+ G+V+ + G Sbjct: 2 SAPLLKVENLCVNYGHIEAARGISIEVGEGEFVGMIGSNGAGKSSALKAIAGVVKPASGS 61 Query: 63 IDFDGDDIAGLPTHVIARRGIGYVPESRDVFPTLTVAQNLLLG--RRSGRAPVHGWREE- 119 I G + GL +H + +G+ VPE R VF +V NL+LG ++ R+ V R++ Sbjct: 62 ITLGGKPVQGLASHEMVHQGVALVPEGRFVFADQSVEDNLILGGFVQAQRSGVAALRDDI 121 Query: 120 -EVYALFPALARRHKVAAGALSGGEQQMLALGRALLGNPSLLLIDEPTEGLSPQMVEQVA 178 ++ LFP L R AG+LSGGEQQML + R L+ +P LLLIDE + GL+P++++ + Sbjct: 122 DRMFQLFPRLKERRTQQAGSLSGGEQQMLVIARGLMSHPRLLLIDEVSLGLAPKILDFLF 181 Query: 179 HYLELLRQRNVAVLLIEQKQAIALELSQRAYVMGRGEMVFHGTPAALQADQDLQREWL 236 L L ++ +++LL+EQ AL ++ RAYVM G + G + L D + +L Sbjct: 182 PVLVDLNRQGLSILLVEQIATRALAVTSRAYVMENGNVKISGRSSDLVKDAAVMEAYL 239 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 128 bits (322), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/238 (34%), Positives = 132/238 (55%), Gaps = 7/238 (2%) Query: 6 SLLRVDRLHAWYGQSHVLHGVSLEVQRGEIVSILGRNGAGRSTLLKALMGLVRSRGG-ID 64 S L V L YG V+ V+L+V+ GE++ +LG NGAG++T ++GLV S G I+ Sbjct: 3 SKLIVSGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRIE 62 Query: 65 FDGDDIAGLPTHVIARRGIGYVPESRDVFPTLTVAQN----LLLGRRSGRAPVHGWREEE 120 DG DI+ P H A+ G+ Y+P+ VF L+V N L L R +G+A E+ Sbjct: 63 LDGVDISRQPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALSKEQIEQR 122 Query: 121 VYALFPAL--ARRHKVAAGALSGGEQQMLALGRALLGNPSLLLIDEPTEGLSPQMVEQVA 178 + L L + + A +LSGGE++ + + RAL NP +L+DEP G+ P V ++ Sbjct: 123 LDTLLADLQIEKLRENQALSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEIQ 182 Query: 179 HYLELLRQRNVAVLLIEQKQAIALELSQRAYVMGRGEMVFHGTPAALQADQDLQREWL 236 + L++R + VL+ + L + RAY++ +G ++ G P + AD+ ++R +L Sbjct: 183 RIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDIIADESVRRVYL 240 >gi|134093662|ref|YP_001098737.1| branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 124 bits (311), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 131/225 (58%), Gaps = 6/225 (2%) Query: 8 LRVDRLHAWYGQSHVLHGVSLEVQRGEIVSILGRNGAGRSTLLKALMGLVRSR-GGIDFD 66 L ++ ++ + VL +S+ ++ GE+V ++GRNGAG+ST +++MG + G I + Sbjct: 3 LALENVNVILAGNPVLRDISMHIEPGELVCLVGRNGAGKSTTFRSIMGFQPLKSGAIKWK 62 Query: 67 GDDIAGLPTHVIARRGIGYVPESRDVFPTLTVAQNLLL---GRRSGRAPVHGWREEEVYA 123 I G+ TH I G+GY PE DVF LTV N+ L R+SGR+ R +E YA Sbjct: 63 RSAINGMQTHKIVELGLGYTPEGSDVFGDLTVEDNIALPTWTRKSGRSAQE--RIDEAYA 120 Query: 124 LFPALARRHKVAAGALSGGEQQMLALGRALLGNPSLLLIDEPTEGLSPQMVEQVAHYLEL 183 +FP L + LSGGE++M+++ RAL +P LLL+DE EGLSP ++ ++ L+ Sbjct: 121 VFPKLKQYLHRGGQQLSGGERKMVSIARALALDPELLLLDEAFEGLSPAIIPTISEGLQS 180 Query: 184 LRQRNVAVLLIEQKQAIALELSQRAYVMGRGEMVFHGTPAALQAD 228 + ++ VLL E + R YV+ RGE+VF GT A +AD Sbjct: 181 ILKQGRGVLLAESNFYHLPPFADRLYVIERGEIVFEGTLAQAEAD 225 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 441,030 Number of extensions: 16796 Number of successful extensions: 198 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 144 Number of HSP's successfully gapped: 45 Length of query: 238 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 159 Effective length of database: 740,042 Effective search space: 117666678 Effective search space used: 117666678 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)