BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2099.p (252 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 154 4e-39 gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 138 2e-34 gi|134096408|ref|YP_001101483.1| high-affinity branched-chain am... 117 4e-28 gi|134093663|ref|YP_001098738.1| putative branched-chain amino a... 117 8e-28 gi|134095531|ref|YP_001100606.1| ABC transporter ATP-binding pro... 111 3e-26 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 154 bits (389), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 92/252 (36%), Positives = 143/252 (56%), Gaps = 6/252 (2%) Query: 1 MSTAYALELHGLHKAFERSQILCGVDLQLQAGERCALIGPNGAGKSSLFNLVSGRYRADA 60 +S L + + K F Q L V++++ G+ LIGPNGAGK++ FN+++G Y+AD+ Sbjct: 5 LSPQIILNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADS 64 Query: 61 GRVLLHGRDITRDSPQQINRLGLARSFQITSLFPRLSAFENV---RCALLWTLGYRYAFW 117 G L G+ + +P + + G+AR+FQ LF ++A ENV R + F Sbjct: 65 GSFELAGKAYSPSAPHLVAKAGIARTFQNIRLFGEMTALENVMVGRHVRTHQGLFGAVFH 124 Query: 118 RRISQLRDA--NARAHAVLDKVGLAARAEVAAGELSYAEQRALELAVTIAADASVILLDE 175 + ++ +A ARA +LD VG+A A A LSY +QR LE+A +A D ++ LDE Sbjct: 125 HKAARQEEAAIRARAMELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALDE 184 Query: 176 PTAGMSRAESAAMVALIREVTV-GKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDSAQR 234 P AGM+ E + L+ ++ GKT+L++EHD+++V L DRI V+D G+ IA Sbjct: 185 PAAGMNATEKLGLRELLVKIKAEGKTILLIEHDVKLVMGLCDRITVLDYGKPIAEGVPAD 244 Query: 235 IRANPQVQALYL 246 ++ NP V YL Sbjct: 245 VQKNPAVIEAYL 256 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 138 bits (348), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/230 (37%), Positives = 124/230 (53%), Gaps = 18/230 (7%) Query: 29 LQAGERCALIGPNGAGKSSLFNLVSGRYRADAGRVLLHGRDITRDSPQQINRLGLARSFQ 88 L+AG ++IGPNGAGKS+ N VSG YR +G + G+ T Q+ R+GLAR+FQ Sbjct: 370 LKAGTVHSVIGPNGAGKSTFINCVSGFYRPTSGSIEFMGQIATAKQSHQLARMGLARTFQ 429 Query: 89 ITSLFPRLSAFENV--------RCALLWTLGYRYAFWRRISQLRDAN---ARAHAVLDKV 137 T LF ++ ENV R L TL R S D A A +L+ V Sbjct: 430 NTELFGDMTCLENVLVGADSRYRSGLFATL------LRLPSYFHDERRYAAEARCLLEYV 483 Query: 138 GLAARAEVAAGELSYAEQRALELAVTIAADASVILLDEPTAGMSRAESAAMVALIREVTV 197 GL AE A L + QR LE+A +A ++LLDEP AG++ E ++ LIR + Sbjct: 484 GLDDYAEEKARNLPFGHQRRLEIARALAMSPKLLLLDEPAAGLTHGEIEDLMKLIRNLAS 543 Query: 198 GK-TLLMVEHDMQVVFDLADRIAVMDNGRVIACDSAQRIRANPQVQALYL 246 + T+L+VEH + ++ ++D + V+D G+VIA + +R+NP V Y Sbjct: 544 HQITVLLVEHHVDMIMAVSDHVTVLDYGKVIASGTVAEVRSNPAVIEAYF 593 >gi|134096408|ref|YP_001101483.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 276 Score = 117 bits (294), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 130/235 (55%), Gaps = 16/235 (6%) Query: 25 VDLQLQAGERCALIGPNGAGKSSLFNLVSGRYRADAGRVLLHGRDITRDSPQQINRLGLA 84 ++L + GE L+GPNG+GK++ FN+++G Y+A +G ++ GR++ +PQ+I R G+A Sbjct: 41 LNLHIVEGEVLGLLGPNGSGKTTFFNVLTGLYKASSGSIIYQGREVIGQTPQEIYRSGVA 100 Query: 85 RSFQITSLFPRLSAFENV--------RCALLWTLGYRYAFWRRISQLRDANARAHAVLDK 136 R+FQ + L L+ F+N+ + L + L R AF ++ A+ A+L Sbjct: 101 RTFQRSRLSLPLTVFDNIVIGDYQHMQHGLFFNLFRRKAFR---AEYDAYVAKVEALLHI 157 Query: 137 VG--LAARAEVAAGELSYAEQRALELAVTIAADASVILLDEPTAGMSRAESAAM---VAL 191 L AR S ++R +E+ + ++ ++LLDEP+AGM+ E+ A+ + Sbjct: 158 FSPPLVARMFEPVETFSMIDRRRIEVCRALLSEPRLLLLDEPSAGMTHDETEALMDDILQ 217 Query: 192 IREVTVGKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDSAQRIRANPQVQALYL 246 +R T++++EH+M V+ + DR V + G+ IA + I A+P VQ YL Sbjct: 218 VRNKLSNLTVVLIEHEMNVIKRITDRCIVFNYGKKIAEGTYAEITADPNVQTAYL 272 >gi|134093663|ref|YP_001098738.1| putative branched-chain amino acid ABC transporter, ATP-binding protein [Herminiimonas arsenicoxydans] Length = 255 Score = 117 bits (292), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 121/233 (51%), Gaps = 3/233 (1%) Query: 22 LCGVDLQLQAGERCALIGPNGAGKSSLFNLVSGRYRADAGRVLLHGRDITRDSPQQINRL 81 L VDL + GE +++GPNGAGK++L N+++G ++ G V +G +I + Sbjct: 23 LHNVDLSVSRGEFVSVVGPNGAGKTTLVNVLTGLHQPTTGNVHFNGSNIAGVGAVDLATR 82 Query: 82 GLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRISQLRDANARAHAVLDKVGLAA 141 GLAR+FQ+TS+FP L+ E + + L R+ + + R N D GLA Sbjct: 83 GLARAFQLTSIFPELTVRETIAVSACSYLNMRWNGFGSLFGSRKVNDIVVRTADAFGLAP 142 Query: 142 RAEVAAGELSYAEQRALELAVTIAADASVILLDEPTAGMSRAES-AAMVALIREVT-VG- 198 + L + ++ L++A A V+LLDEPTAG+S A+ M L+R +G Sbjct: 143 WLDTKGSSLPHGRRKLLDVASAFALHPKVMLLDEPTAGVSTADKHGVMETLLRAAKHMGI 202 Query: 199 KTLLMVEHDMQVVFDLADRIAVMDNGRVIACDSAQRIRANPQVQALYLDRRRH 251 + +++VEHDM +V + RI M G+ IA AN ++ ++ + + H Sbjct: 203 EAIMLVEHDMDLVSRYSTRIIAMQAGKKIADLPRDEFFANEEIISIVVGKGAH 255 >gi|134095531|ref|YP_001100606.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 266 Score = 111 bits (278), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 120/222 (54%), Gaps = 20/222 (9%) Query: 18 RSQILCGVDLQLQAGERCALIGPNGAGKSSLFNLVSGRYRADAGRVLLHGRDITRDSPQ- 76 R+ + GV L GE ++GP+G+GK++L +++SG + + G V++ G+D+ + S Sbjct: 56 RTMAVNGVSFDLYFGEMLFIVGPSGSGKTTLLSIISGILKPNEGSVIVKGQDLWQLSKDD 115 Query: 77 ----QINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRISQLRDANARAHA 132 ++N +G FQ LFPRL+ ENV L+ + ++ DA A Sbjct: 116 LADFRLNTIGFV--FQDYHLFPRLTTAENVAIPLIL----------KKNKWGDAITEAKK 163 Query: 133 VLDKVGLAARAEVAAGELSYAEQRALELAVTIAADASVILLDEPTAGMSRAESAAMVALI 192 LD VGL R ++ +LS EQ+ + +A + + S+++LDEPTA + ++A + Sbjct: 164 YLDIVGLKERVDIVPVKLSGGEQQRVAIARAMVSHPSILILDEPTASLDGDTGRKILAFV 223 Query: 193 REVTVGKT--LLMVEHDMQVVFDLADRIAVMDNGRVIACDSA 232 + + + +L+V HD + +F+ ADRI M++G++ D A Sbjct: 224 HDQILNEKTCILIVTHDTR-IFEFADRIMYMEDGKITGFDKA 264 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.324 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 442,618 Number of extensions: 17060 Number of successful extensions: 257 Number of sequences better than 1.0e-08: 41 Number of HSP's gapped: 192 Number of HSP's successfully gapped: 42 Length of query: 252 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 172 Effective length of database: 736,747 Effective search space: 126720484 Effective search space used: 126720484 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 127 (53.5 bits)