BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2096.p
         (499 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094941|ref|YP_001100016.1| hypothetical protein HEAR1735 [...   706   0.0  

>gi|134094941|ref|YP_001100016.1| hypothetical protein HEAR1735
           [Herminiimonas arsenicoxydans]
          Length = 500

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/485 (70%), Positives = 393/485 (81%), Gaps = 2/485 (0%)

Query: 17  PFGNRFADLPPAFYTRLQPTPLPAPYLVGFSDAAAASVGLARPAEEDRSFLDIFAGNQIA 76
           P  N FA LPPA YT L PTPLPAPYLV  S +AAA +GL     +  +F++ F GN+I 
Sbjct: 16  PLANSFASLPPAHYTALMPTPLPAPYLVCASASAAALIGLDFSDIDSAAFIETFTGNRIP 75

Query: 77  PGSMPLSAVYSGHQFGVWAGQLGDGRAITLGDLAATD--GQGRIELQLKGAGLTPYSRMG 134
            GS PLSAVYSGHQFGVWAGQLGDGRAI LGD+ A      GR+ELQLKGAGLTPYSRMG
Sbjct: 76  DGSRPLSAVYSGHQFGVWAGQLGDGRAILLGDVPAPTMIPSGRLELQLKGAGLTPYSRMG 135

Query: 135 DGRAVLRSSIREFLCSEAMAALGIPTTRALTVIGSDQRVLRESAETAAVVTRMAPSFIRF 194
           DGRAVLRSSIREFLCSEAMAALGIPTTRAL V GSDQ VLRE  ETAAV TRMA SF+RF
Sbjct: 136 DGRAVLRSSIREFLCSEAMAALGIPTTRALCVTGSDQIVLREQRETAAVATRMAQSFVRF 195

Query: 195 GSFEHWYYNQRFDELKVLGDTVLEQFYPALLQEDNPYQALLQEVTRRTATLMAQWQAVGF 254
           GSFEHW+YN++ DELK L D V+ QFYP     +NPY+ALL EVT RTA ++A WQAVGF
Sbjct: 196 GSFEHWFYNEKHDELKTLADYVIAQFYPQFKTAENPYKALLTEVTLRTAQMIAHWQAVGF 255

Query: 255 MHGVMNTDNMSILGLTLDYGPFGFMEAFDARHICNHTDGQGRYSYQMQPRIGQWNCFALG 314
           MHGVMNTDNMSILGLTLDYGPFGFMEAF+A HICNHTD QGRYSY  QP+IG+WNC+ALG
Sbjct: 256 MHGVMNTDNMSILGLTLDYGPFGFMEAFNATHICNHTDQQGRYSYARQPQIGEWNCYALG 315

Query: 315 QAMLPLIGSVEQTEAALAGYEAVFQAQHDALLRAKLGLRTQQADDARLIEALFAILQANH 374
           Q +LPLIG V++T+ AL  Y+  +  +   L+RAKLGL+TQQ DD +L +ALFA+LQ +H
Sbjct: 316 QTLLPLIGDVDETQNALRIYKPAYAEKFAELMRAKLGLQTQQPDDGKLFDALFAVLQGSH 375

Query: 375 VDFTLFFRRLGDLQISNTANDEALRDLILDRPAFDAWAAQYRARLRAEDSDDAARRLAMH 434
            DFTLFFRRLG+L+I   A+ EALRDL LDR AFD WA QY  RL+ E+SDD AR+LAMH
Sbjct: 376 ADFTLFFRRLGELRIGQAASREALRDLFLDRAAFDDWALQYELRLQLENSDDDARKLAMH 435

Query: 435 QVNPKYVLRNYLAQIAIERAQHKDFSEVARLQAILSRPFDEQPEFDQYADLPPDWASHLE 494
            VNPKYVLRNYLAQIAIE+AQ+KDFSEVA+L  +L +PFDEQPE ++YA LPPDWA+ LE
Sbjct: 436 AVNPKYVLRNYLAQIAIEKAQNKDFSEVAKLLQVLEKPFDEQPENEKYAALPPDWANDLE 495

Query: 495 VSCSS 499
           VSCSS
Sbjct: 496 VSCSS 500


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 982,669
Number of extensions: 41549
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 413
Effective length of database: 716,977
Effective search space: 296111501
Effective search space used: 296111501
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)