BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2093.p
         (94 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094944|ref|YP_001100019.1| BolA protein [Herminiimonas ars...    88   1e-19
gi|134096227|ref|YP_001101302.1| hypothetical protein HEAR3072 [...    54   1e-09

>gi|134094944|ref|YP_001100019.1| BolA protein [Herminiimonas
          arsenicoxydans]
          Length = 85

 Score = 87.8 bits (216), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/81 (67%), Positives = 67/81 (82%)

Query: 11 ITARLTATFSPTVCLVEDESALHAGHAGAASGGGHYRIRLVSNLFEGKNRLQRHRLVYDC 70
          I  RL  TF+P  C +EDESALHAGHAGAASGGGH+R+R++S  FE ++R++RHRLVYDC
Sbjct: 4  IRERLLETFTPLECQLEDESALHAGHAGAASGGGHFRLRIISTQFEKQSRIKRHRLVYDC 63

Query: 71 LSDLMQQEIHALAIVAHSPSE 91
          L D+MQ EIHALAI A +PSE
Sbjct: 64 LDDMMQTEIHALAITALAPSE 84


>gi|134096227|ref|YP_001101302.1| hypothetical protein HEAR3072
          [Herminiimonas arsenicoxydans]
          Length = 77

 Score = 53.9 bits (128), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 21 PTVCLVEDESA--LHAGHAGAASGGGHYRIRLVSNLFEGKNRLQRHRLVYDCLSDLMQQE 78
          PT  LV+   A  ++  H   +  G H+   +VS+ F GK  +QRH+LVY  L D M++E
Sbjct: 2  PTPELVKSYIAAGMNCTHLEVSGDGAHFEAVIVSDAFAGKRLIQRHQLVYAALGDRMREE 61

Query: 79 IHALAIVAHSPSE 91
          IHAL++   +P E
Sbjct: 62 IHALSMKTLTPEE 74


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 123,416
Number of extensions: 2610
Number of successful extensions: 7
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 2
Length of query: 94
Length of database: 1,000,347
Length adjustment: 63
Effective length of query: 31
Effective length of database: 792,762
Effective search space: 24575622
Effective search space used: 24575622
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 121 (51.2 bits)