BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2092.p (258 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094945|ref|YP_001100020.1| peptidyl-prolyl cis-trans isome... 412 e-116 gi|134094954|ref|YP_001100029.1| putative peptidyl-prolyl cis-tr... 92 3e-20 gi|134094865|ref|YP_001099940.1| putative peptidyl-prolyl cis-tr... 75 3e-15 gi|134093645|ref|YP_001098720.1| periplasmic peptidyl-prolyl cis... 62 4e-11 >gi|134094945|ref|YP_001100020.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Herminiimonas arsenicoxydans] Length = 258 Score = 412 bits (1058), Expect = e-116, Method: Compositional matrix adjust. Identities = 196/258 (75%), Positives = 233/258 (90%) Query: 1 MTFKPARLLVLLFAIASVPAFAQNLAVVNGKAIPSSRADLMVKQMTAQGQPDSPQLRSAI 60 MT KPA LLV LF A++PA AQNLAVVNGK +PSSRAD+M+KQM AQGQ D+P+LR+ + Sbjct: 1 MTLKPAHLLVALFVSAALPAMAQNLAVVNGKPVPSSRADIMIKQMAAQGQQDTPELRAMV 60 Query: 61 KEELINREILMQEADKQGLANSTDVKNQLELARQSIVIRALIADYLKKNPVSDADIKAEY 120 KEELINREIL+QEADK GL + +VK+Q+E+ARQSI+IRAL+AD+LKKNPV DADIKAEY Sbjct: 61 KEELINREILIQEADKLGLGTNAEVKSQVEIARQSILIRALVADFLKKNPVKDADIKAEY 120 Query: 121 DKFKAQAGDKEYHARHILVDKKEDAEAIIAKLKAGTKFEDLAKQSKDTGSAANGGDLDWA 180 D+F+AQA DKEYHARHILV+K+EDA+AIIAKLK G KFE+LAKQSKD GSA NGGDLDWA Sbjct: 121 DRFRAQASDKEYHARHILVEKEEDAKAIIAKLKGGAKFEELAKQSKDPGSADNGGDLDWA 180 Query: 181 TPASFVKPFSDAMVALKKGEITQTPVQTQFGWHVIKLEDVRPAKVPTLDEVKPQIAEALQ 240 PA+FVKPFSDAMV+L+KG++ TPV+TQFG+HVIKL+DVR AK+PTL+EVKPQIAE LQ Sbjct: 181 APAAFVKPFSDAMVSLQKGQLYDTPVKTQFGYHVIKLDDVRAAKIPTLEEVKPQIAEGLQ 240 Query: 241 QKKLQAYQEQLRAKAKVQ 258 QKKLQA+Q+QLRAKAK+Q Sbjct: 241 QKKLQAFQQQLRAKAKIQ 258 >gi|134094954|ref|YP_001100029.1| putative peptidyl-prolyl cis-trans isomerase protein [Herminiimonas arsenicoxydans] Length = 636 Score = 91.7 bits (226), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 58/147 (39%), Positives = 87/147 (59%), Gaps = 16/147 (10%) Query: 111 VSDADIKAEYDKFKAQAG-DKEYHARHILVDKKEDAE------------AIIAKL-KAGT 156 VSDADIK+ Y++ G +++ A HIL+ +DA ++A L K Sbjct: 246 VSDADIKSYYEQNAKHYGVEEQRRASHILIGVNKDASDAEKAAAKAKAEQLLATLHKNPQ 305 Query: 157 KFEDLAKQ-SKDTGSAANGGDLDWATPASFVKPFSDAMVALKKGEITQTPVQTQFGWHVI 215 +F LAK+ S DTGSA GGDL + VKPF +A LK+GE++ VQ+ +G+H+I Sbjct: 306 EFAKLAKENSSDTGSAERGGDLGFFGKGMMVKPFEEAAFKLKQGELSDL-VQSDYGFHII 364 Query: 216 KLEDVRPAKVPTLDEVKPQIAEALQQK 242 KL ++PA + TLDEVK +IA ++++ Sbjct: 365 KLTAIKPASIKTLDEVKNEIASDIRKQ 391 >gi|134094865|ref|YP_001099940.1| putative peptidyl-prolyl cis-trans isomerase (NifM related) [Herminiimonas arsenicoxydans] Length = 248 Score = 75.1 bits (183), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 69/249 (27%), Positives = 114/249 (45%), Gaps = 36/249 (14%) Query: 28 VNGKAIPSSRADLMVKQMTAQGQPDSPQLRSAIKEELINREILMQEADKQGLANSTDVKN 87 VNG IP D ++Q Q L+ ++ E L+ R +L+ EAD+ G+A + D Sbjct: 5 VNGIEIP----DAAIEQELPHHQHAGNPLKQSVHE-LVLRTVLLHEADRLGIAGAGDDGR 59 Query: 88 QLELARQSIVIRALIADYLKKNPVSDADIKAEYDKFKAQ----AGDKEYHARHILVDK-- 141 I AL A ++ V DAD A ++ Q + ARHIL Sbjct: 60 ----------IEALFAQEVR---VPDADEAACATFYRNQPQRFTSGELVEARHILFQVTP 106 Query: 142 -------KEDAEAIIAKLKAG-TKFEDLAKQSKDTGSAANGGDLDWATPASFVKPFSDAM 193 +E EA++A+L+ +F +LA++ + S GG+L T V F + Sbjct: 107 SVPLELLRETGEAVLAELRVHPERFAELAREYSNCASGTVGGNLGQLTRGQTVPEFEALV 166 Query: 194 VALKKGEITQTPVQTQFGWHVIKLEDVRPAKVPTLDEVKPQIAEALQ----QKKLQAYQE 249 L +GE+ ++T+FG H++++ +V L+ VK QIA+ L Q+ + Y + Sbjct: 167 FRLPEGELADRLLETRFGLHIVQVLRRVAGEVVPLEAVKAQIADHLSRQAWQRAVHQYLQ 226 Query: 250 QLRAKAKVQ 258 L +A +Q Sbjct: 227 ILVGRADIQ 235 >gi|134093645|ref|YP_001098720.1| periplasmic peptidyl-prolyl cis-trans isomerase (PPIase), involved in maturation of outer membrane proteins [Herminiimonas arsenicoxydans] Length = 469 Score = 61.6 bits (148), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 16/143 (11%) Query: 130 KEYHARHILVDKKE-----DAEAIIAKLK-----AGTKFEDLAKQSKDTGSAANGGDLDW 179 K+ HA HIL+ + DA + +LK FE+LA+ + SA+ GGDL W Sbjct: 323 KQTHASHILIKVNQVVSAADARRKLTELKQRLDNKAATFEELARLHSNDFSASKGGDLGW 382 Query: 180 ATPASFVKPFSDAMVALKKGEITQTPVQTQFGWHVIKLEDVRPAKVPTLDEVKPQIAEAL 239 P V F AM AL GE+++ P+++ FG+H+I +++ + V + + + + +AL Sbjct: 383 IYPGDTVPEFERAMDALPVGEVSE-PIESPFGYHLILVKERKSDDV-SQERQRLVVRQAL 440 Query: 240 QQKKL----QAYQEQLRAKAKVQ 258 + +K+ Q + Q+R +A V+ Sbjct: 441 RAQKVEEATQDWLRQVRDRAYVE 463 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.129 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 453,217 Number of extensions: 17834 Number of successful extensions: 59 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 56 Number of HSP's successfully gapped: 5 Length of query: 258 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 178 Effective length of database: 736,747 Effective search space: 131140966 Effective search space used: 131140966 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 128 (53.9 bits)