BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2091.p (373 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas a... 124 8e-30 gi|134093520|ref|YP_001098595.1| putative porin [Herminiimonas a... 124 9e-30 gi|134095723|ref|YP_001100798.1| putative porin transmembrane pr... 124 1e-29 gi|134096245|ref|YP_001101320.1| porin transmembrane protein [He... 87 1e-18 >gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas arsenicoxydans] Length = 357 Score = 124 bits (311), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 130/394 (32%), Positives = 186/394 (47%), Gaps = 61/394 (15%) Query: 3 KSSMLLLAAGLTTGGAAFAQSNVTIYGIVDTSIHYLNNANAKGNSNVRMD---NGAIANS 59 K S+L LA GAA AQS+VT+YGIVD I + + +N R++ +G + S Sbjct: 2 KKSLLALAVLGAFAGAASAQSSVTVYGIVDMGI---TSQDTGAGANDRLNGVTSGNQSAS 58 Query: 60 RLGFKGSEDLGGGLKAMFQLENGFSSDNGAMLQ--GGSLFGRQSWVGLQGAYGKVRVGRQ 117 R+GFKG+EDLG GLKA F LE ++D G + Q G + F R + VGL G +G V +GRQ Sbjct: 59 RIGFKGTEDLGNGLKANFVLEQTIAADTGVLSQVDGKTAFNRFATVGLSGNFGAVNLGRQ 118 Query: 118 NTPLFDLLADHFDPL-TVGNYASNSWLPAAASLV----RSPNMLRY-DGQFGPVAASASW 171 + + D D DP G A S + A+L R N ++Y + A + Sbjct: 119 VSAIKDAY-DAIDPFGDGGTIAPISAIFFNAALKGDNGRISNSIKYTSNSYSGFKFGAHY 177 Query: 172 AFGEKAGSIRTGSQFSSALRYTAGPLSLGGGYQQTVSGTDSSL-----------KDTVWN 220 AFGE+AG S + L Y GPL++ GY +SG DS+ KD + Sbjct: 178 AFGEQAGRTGADSNYGLNLGYANGPLNVQFGY---MSGDDSTAGAPGFKPVKNSKDKMTF 234 Query: 221 LSASYDFGVAKIFGGWINIKDRTGTTGAVMAADSDVSNTWTTASIPNNGTSAERKDNGFF 280 L A+YDFGVAK+ AA D N ++ N K + Sbjct: 235 LGATYDFGVAKLH-----------------AAYGDSKNQPVAGNVDN-------KYRNYM 270 Query: 281 LGSSYKATSALTLTGAFYYDRSKNVSYVSTGNVGDGKRYAVVGWADYALSKRTQLYTTVD 340 LG S K +A ++ ++ + ++ V N D KR ++ D LSKRT LY Sbjct: 271 LGVSAKVGAAGSIMASYTVNDTRTFGGVKA-NDRDSKRAGIMYAHD--LSKRTNLYAGYS 327 Query: 341 Y-NKAKDAAVYELTSSPSGKTSVTTVGVGIRHIF 373 + + K+A + L + SG + VG+RH F Sbjct: 328 HTSNDKNAKLNALVADQSG----SMFAVGVRHKF 357 >gi|134093520|ref|YP_001098595.1| putative porin [Herminiimonas arsenicoxydans] Length = 363 Score = 124 bits (310), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 113/375 (30%), Positives = 165/375 (44%), Gaps = 63/375 (16%) Query: 21 AQSNVTIYGIVDTSIHYLNNANAKGNSNVRM-DNGAIANSRLGFKGSEDLGGGLKAMFQL 79 A S++++YG +D+ I ++ N A G S ++ NG N+RLG KG E+LGGGL F L Sbjct: 30 APSSISMYGTIDSGIRHVTNTTASGGSTTKLGSNGEYYNNRLGIKGMENLGGGLNMHFHL 89 Query: 80 ENGFSSDNGAM-LQGGSLFGRQSWVGLQGAYGKVRVGRQNT---------PLFDLLADHF 129 E+GF++ G + + LF R S +G+ G++G + GRQ + F H Sbjct: 90 ESGFNTGTGELDNKANRLFNRISSIGIAGSFGSLDFGRQPSVACKAVYAYEPFQYRYVHI 149 Query: 130 DPL---TVGNYASNSWLP-AAASLVRSPNMLRYDGQFGPVAASASWAFGEKAGSIRTGSQ 185 PL GN P R N +Y G+FG ASA + GE GS R + Sbjct: 150 IPLAGAVAGNLDGRVSRPFGTVDGPRFSNGAQYFGKFGSFTASAEYIMGEVPGSNRNQAA 209 Query: 186 FSSALRYTAGPLSLGGGYQQ------TVSGTDSSLKDTVWNLSASYDFGVAKIFGGWINI 239 + L Y G ++GG Y + TV+ +D ++ Y +I GG++ Sbjct: 210 KAVGLVYNDGTFTVGGAYTRQNPNIGTVAASDYREQNQT-TFGGGYKIDALRITGGYLK- 267 Query: 240 KDRTGTTGAVMAADSDVSNTWTTASIPNNGTSAERKDNGFFLGSSYKATSALTLTGAFYY 299 TT A+ S N W LG+ Y T A +LT +Y Sbjct: 268 -----TTTAIT---SQAKNIW--------------------LGARYDFTPAASLTAGYYR 299 Query: 300 DRSKNVSYVSTGNVGDGKRYAVVGWADYALSKRTQLYTTVDYNKAKDAAVYELTSSPSG- 358 + + T +R ++ A YALS RT LY +D A ++ L S PSG Sbjct: 300 ------TTLETAQSEIARRNLLIVGATYALSPRTSLYADID-----QAVLHGLASLPSGS 348 Query: 359 KTSVTTVGVGIRHIF 373 +T T + GI HIF Sbjct: 349 QTRQTGISAGISHIF 363 >gi|134095723|ref|YP_001100798.1| putative porin transmembrane protein [Herminiimonas arsenicoxydans] Length = 392 Score = 124 bits (310), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 127/406 (31%), Positives = 187/406 (46%), Gaps = 47/406 (11%) Query: 1 MKKSSMLLLAAGLT--TG--GAAFAQSNVTIYGIVDTSIHYLNNANAKGNSNVRMDNGAI 56 M + ++L A LT TG A AQ+ VTIYGI D ++ Y ++N G SN M +G + Sbjct: 1 MTARNFVVLVAALTLYTGVLQNAGAQNGVTIYGIADVAMVY--SSNQGGASNTYMRSGNL 58 Query: 57 ANSRLGFKGSEDLGGGLKAMFQLENGFSSDNGAMLQGGSLFGRQSWVGLQGA-YGKVRVG 115 A SR+GFKG+EDLGGG +A+FQLE+GF+ D G M +LF RQ++VG+ YG + G Sbjct: 59 AGSRIGFKGTEDLGGGTQAIFQLESGFNLDTGEMSSSSTLFNRQAFVGINNTRYGALTAG 118 Query: 116 RQNTPLFDLLADHFDP---LTVGNYASNSWLPAAASLVRSPNMLRYDGQFGPV----AAS 168 RQ TP + L P LT A + + +RS N + Y PV S Sbjct: 119 RQYTPYY-LFVGPIGPTNSLTGATGAHPGDIDGLDTTIRSNNSITYT---SPVWNGLQVS 174 Query: 169 ASWAFGEKAGSIRTGSQFSSALRYTAGPLSLGGGYQQTVSGTDSSLKDTVWNLSASYDFG 228 A FGE AG + +G S+A++Y + GYQ+ +S+ VW+ +AS +F Sbjct: 175 ALAGFGETAGDMGSGRTISAAIKYDINNWNFALGYQRL---NNSNNPGGVWSPNASANFN 231 Query: 229 VAKIFGGWINIKDRTGTTGAVMAADSDV---SNTWTTASIPNNGTSAERKDNGFFLG--S 283 + + G+++ GA V +N PN + +K LG + Sbjct: 232 TSPVNNGYLSADSAQYLAGAARYTMGKVIVGANASRVEYRPNGNSLFTQKATFDTLGLLT 291 Query: 284 SYKATSALTLTGAFYYDRSKNVSYVSTGNVGDGKRYAVVGWAD-YALSKRTQLYTTVDYN 342 Y+ T ++ + Y + K + +S D +Y + Y+ SKRT +Y Y Sbjct: 292 GYQMTPVFFVSVGYSYTKEKAANGIS-----DPAKYHQLALEQTYSFSKRTAIYFLEAYQ 346 Query: 343 KAKD-------------AAVY--ELTSSPSGKTSVTTVGVGIRHIF 373 AK AV +PS + VGIRH F Sbjct: 347 VAKGNTLGLGGSGPVRAVAVVGDSQNGTPSDGANQAVFMVGIRHSF 392 >gi|134096245|ref|YP_001101320.1| porin transmembrane protein [Herminiimonas arsenicoxydans] Length = 394 Score = 87.0 bits (214), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 111/414 (26%), Positives = 161/414 (38%), Gaps = 104/414 (25%) Query: 19 AFAQSNVTIYGIVDTSIHYLNNANAKGNSNVRMDNGAIANSRLGFKGSEDLGGGLKAMFQ 78 A AQS+V G VD L N+ G+ +V +++ + S G KG+E+LGGGL+A F Sbjct: 26 ALAQSSVQFVGTVDAFAGSLKNSGDAGSKSV-VNSSGMETSWWGVKGTENLGGGLQAQFA 84 Query: 79 LENGFSSDNGAM--LQGGSLFGRQSWVGLQGAYGKVRVGRQNTPLFDLLADH-------- 128 L + F D GA ++F R + VGL G++G+V VGR P F Sbjct: 85 LSSFFRPDTGAQGRFDSDTMFSRDAHVGLSGSFGRVSVGRDLAPNFIPTLTFSPFGGSFA 144 Query: 129 FDPLTV------GNYASNSWLPAAASLVRSPNMLRY-DGQFGPVAASASWAFGEKAGSIR 181 F PL + G+Y W P A N + Y + G S + FGE+AG Sbjct: 145 FSPLELHTQTPSGSYRGQVWSPTVAGDTGWSNEIMYVMPKLGGFTTSLFFQFGEQAGKPG 204 Query: 182 TGSQFSSALRYTAGPLSLGGGYQ--------QTVSGTDSSL------------------- 214 + + + Y GPLS G +Q +V+ DS + Sbjct: 205 K-NNYGANTMYEQGPLSFGAYFQSVKVNNPLDSVTSGDSRVFTFTPYNQATGATYTLAAS 263 Query: 215 KDTVWNLSASYDFGVAKIFGGWINIKDRTGTTGAVMAADSDVSNTWTTASIPNNGTSAER 274 ++ W + +YD K+FG +R +A DS + Sbjct: 264 RNDTWFVGGAYDLQFMKLFGTLNYSTNRL----IGIANDSQY----------------DL 303 Query: 275 KDNGFFLGSSYKATSALTLTGAFYYDRSKNVSYVSTGNVGDGKRYAVVGWA--------- 325 K N LG+S L S+ T DG AV+G A Sbjct: 304 KSNTVQLGTSVPVGKGSVL-----------FSWARTNVKADGDFSAVLGGAGGKSSIIRN 352 Query: 326 ------DYALSKRTQLYTTVDYNKAKDAAVYELTSSPSGKTSVTTVGVGIRHIF 373 DY LSKRT +Y+ V Y+K D +++ ++GVGIR F Sbjct: 353 TASLGYDYFLSKRTDVYSVVSYDKLTD------------QSTGISLGVGIRQRF 394 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.130 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 715,908 Number of extensions: 30800 Number of successful extensions: 71 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 61 Number of HSP's successfully gapped: 4 Length of query: 373 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 290 Effective length of database: 726,862 Effective search space: 210789980 Effective search space used: 210789980 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 129 (54.3 bits)