BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2090.p (1340 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094946|ref|YP_001100021.1| phosphoribosylformylglycinamidi... 2239 0.0 >gi|134094946|ref|YP_001100021.1| phosphoribosylformylglycinamidine synthase [Herminiimonas arsenicoxydans] Length = 1336 Score = 2239 bits (5802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1070/1341 (79%), Positives = 1180/1341 (87%), Gaps = 6/1341 (0%) Query: 1 MLILPGSNALSAFRTQRLLTQLQAVDAAITGVSGRYLHFVDA-KALTQEDEARLNGLLTY 59 MLILPGSNALSAFRT+RLL QLQ +D AI GV+G++LHFVD+ A+ +D RLNGLLTY Sbjct: 1 MLILPGSNALSAFRTERLLLQLQEIDHAIAGVTGQFLHFVDSPAAIAPDDVKRLNGLLTY 60 Query: 60 GDPFNGSDEGDAFVVIPRFGTISPWASKATDIVRNCGMGHIHRVERGIIFRVQVKTGLLG 119 G+PF+ EG+ FVVIPRFGTISPWASKATDI NCGM IHR+ERGI + V +K+GLLG Sbjct: 61 GEPFSAKLEGEEFVVIPRFGTISPWASKATDIAHNCGMTDIHRIERGIRYIVHLKSGLLG 120 Query: 120 GTKKLNEASLPAVAALLHDRMTETVLREPQDAAALFSELQAKPLESVDVIGGGRAALERA 179 G KKL+ ++ AV ALLHDRMTE VLR +A+ LF ELQAKPL +D+ GG++ALE+A Sbjct: 121 GVKKLSGEAIVAVQALLHDRMTEMVLRSADEASGLFRELQAKPLAFIDIAQGGKSALEQA 180 Query: 180 NTELGLALSDDEIDYLVEAFTKAQRNPTDVELMMFAQANSEHCRHKIFNADWTIDGEKQD 239 NTELGLALSDDEIDYL+ AFT A+RNPTDVELMMFAQANSEHCRHKIFNADWTIDG KQD Sbjct: 181 NTELGLALSDDEIDYLLTAFTTAKRNPTDVELMMFAQANSEHCRHKIFNADWTIDGVKQD 240 Query: 240 KSLFGMIKNTHQLAPKGTVVAYSDNSSIIEGATVSRFYQRGATKGNVYEASDELTHILMK 299 SLF MIKNTHQLAP+GTVVAYSDNSS+IEGATV+RFY RGA GNVY AS+ELTHILMK Sbjct: 241 MSLFAMIKNTHQLAPRGTVVAYSDNSSVIEGATVTRFYPRGAASGNVYAASEELTHILMK 300 Query: 300 VETHNHPTAISPFPGASTGAGGEIRDEGATGRGSKPKAGLTGFTVSNLMVTHAVQPWENA 359 VETHNHPTAISPFPGASTGAGGEIRDEGATGRG+KPKAGL+GFTVSNLM+ VQ WEN Sbjct: 301 VETHNHPTAISPFPGASTGAGGEIRDEGATGRGAKPKAGLSGFTVSNLMLPDGVQQWEND 360 Query: 360 RDVAQPVAERAEHAQGGIYGKPERIASPLQIMIDGPLGGAAFNNEFGRPNLGGYFRTYEQ 419 DV V + + YGKP+RIASPLQIMI+GP+G AAFNNEFGRPNLGGYFRTYEQ Sbjct: 361 HDVTVAVTD---DTKSNAYGKPDRIASPLQIMIEGPIGAAAFNNEFGRPNLGGYFRTYEQ 417 Query: 420 NVGGQVMGYHKPIMIAGGMGNISAKHTKKNDLPVGSLLIQLGGPGMRIGMGGGAASSMAT 479 NV G V GYHKPIMIAGG+G+I+A HTKK+DLPVGSLLIQLGGPGMRIGMGG AASSMAT Sbjct: 418 NVAGAVNGYHKPIMIAGGIGSIAAIHTKKHDLPVGSLLIQLGGPGMRIGMGGSAASSMAT 477 Query: 480 GVNTADLDFDSVQRGNPEMERRAQEVINACWALGDENPIQSIHDVGAGGLSNAFPEITND 539 G NTADLDFDSVQRGNPEMERRAQEVINACWA+ D NPI SIHDVGAGGLSNAFPEITND Sbjct: 478 GTNTADLDFDSVQRGNPEMERRAQEVINACWAMQDNNPILSIHDVGAGGLSNAFPEITND 537 Query: 540 AKRGAIFDLRKVPLEESGLAPREIWSNESQERYVLAILPEHLPLFKYLCERERAPFAVVG 599 AKRGAIFDLR VPLEESG+AP+EIWSNESQERYVLAI PE LP F+YLCERER FAVVG Sbjct: 538 AKRGAIFDLRAVPLEESGMAPKEIWSNESQERYVLAIAPESLPQFQYLCERERCLFAVVG 597 Query: 600 TATEERQLKVIDPEHNNSPVDMPMDVLLGKPPKMHRDVQHVEKQLPPVDLTGMDLVEVAQ 659 TATEERQLKVIDP+H N PVDMPMDVLLGKPPKMHRDV HV++ LP VDLTG+DL+E + Sbjct: 598 TATEERQLKVIDPQHGNEPVDMPMDVLLGKPPKMHRDVSHVKQTLPAVDLTGIDLLEASI 657 Query: 660 RVLRLPAVADKSFLITIGDRSVGAMTVRDQMVGPWQVPVADVAVTAMGLEGYLGEAMAMG 719 R+LRLP VADKSFLITIGDR+VG TVRDQMVGPWQVPVAD AVT M EGYLGEAMAMG Sbjct: 658 RILRLPTVADKSFLITIGDRTVGGTTVRDQMVGPWQVPVADCAVTTMSFEGYLGEAMAMG 717 Query: 720 ERTPLAVIDAPASGRMAVGEAITNIAAAPIAEIGDIKLSANWMAACGQPGQDAALFDTVK 779 ERTPLAVI+A ASGRMAVGEA+TNIAAAPIA+I DIKLSANWMAACGQPGQDAALFDTVK Sbjct: 718 ERTPLAVINAAASGRMAVGEALTNIAAAPIADISDIKLSANWMAACGQPGQDAALFDTVK 777 Query: 780 AVGMELCPALGISIPVGKDSLSMRSTWSDEEGAKSVTSPVSLIVSGFAPVTDVRRVLTPQ 839 AVGMELCPALGISIPVGKDSLSMR+TW+D+ K+V SPVSLIVS FAPV DVR+ LTPQ Sbjct: 778 AVGMELCPALGISIPVGKDSLSMRTTWNDDGEDKAVISPVSLIVSAFAPVHDVRQSLTPQ 837 Query: 840 LRKDKGETVLILIDLGRGKNRMGASALTQVMQQIGNETPDVDSAEDLKAFFNAIQQLNTE 899 LR D G+TVLI IDLGRGKNR+GASA QV+QQ+GNETPDVDSAEDLK FF AIQ+LN E Sbjct: 838 LRTDAGDTVLIAIDLGRGKNRLGASAFAQVIQQLGNETPDVDSAEDLKGFFAAIQRLNKE 897 Query: 900 DRLLAYHDRSDGGLYATLAEMAFAGHTGISVNLDILTMEAEHAADWGDSKNWTTQVAERR 959 +LLAYHDRSDGGL+ATL EMAFAGH+G+SVNLDILT+E EHA+D GD+KNW QV+ RR Sbjct: 898 QKLLAYHDRSDGGLFATLCEMAFAGHSGLSVNLDILTLEGEHASDGGDAKNWADQVSARR 957 Query: 960 NELTLRALFSEELGAVIQVPAEQKSEVMNVLRTYNLGACSHIIGKPNDRDVIEFMRDAKN 1019 N++TLRALF+EELGAVIQV AEQKSEVMNVLR YNLGACSHI+GK N+ D+IEF RDAK Sbjct: 958 NDMTLRALFNEELGAVIQVRAEQKSEVMNVLREYNLGACSHIVGKLNETDMIEFTRDAKV 1017 Query: 1020 IYGQPRAELHRVWSETSWRIARLRDNPACADAEYERLLDAADPGMTPKLTFDPQEDIAAP 1079 IY Q R +LHR WSETSWRIARLRDNP CADAEY+R+LD DPG+ LTFDPQEDIAAP Sbjct: 1018 IYSQSRIDLHRFWSETSWRIARLRDNPDCADAEYDRILDKLDPGIKSVLTFDPQEDIAAP 1077 Query: 1080 YLSLGAAARPKVAILREQGVNSHIETAYAMHKAGFTAVDVHMSDLIANRAKLDDFKGFIA 1139 +++ G ARP+VAILREQGVNS +ETAY MHK+GF AVDVHMSDLI RA L DFKG IA Sbjct: 1078 FIAKG--ARPRVAILREQGVNSQVETAYVMHKSGFEAVDVHMSDLITGRAHLSDFKGMIA 1135 Query: 1140 VGGFSYGDVLGAGEGWAKTILFNAALAEQFSRFFQRQDTFSLGICNGCQMMSNLKSMIPG 1199 VGGFSYGDVLGAGEGWAKTILFN LAE+F+ +F R DTF+LGICNGCQMMSNLKS+IPG Sbjct: 1136 VGGFSYGDVLGAGEGWAKTILFNMQLAEEFAIYFDRADTFALGICNGCQMMSNLKSIIPG 1195 Query: 1200 AQAWPKFTRNKSEQFEARFVMVEVADSPSIFMQGMAGTQAPIATAHGEGFADFSQTGDID 1259 AQAWPKFTRNK+EQF+ARF MVEV DSPSIF MAGTQ PIA AHGEG+ADFS TGDID Sbjct: 1196 AQAWPKFTRNKAEQFQARFSMVEVTDSPSIFFNDMAGTQTPIAIAHGEGYADFSLTGDID 1255 Query: 1260 RAIIAMRYVDHRGAATEAYPFNPNGSPQGITSVTTPDGRFTVLMPHAERVFRTVTQSWHP 1319 +AI+AMR++D++G +E YP+NPNGSP+GITSVTTPDGRFTVLMPHAERVFR+V QSWHP Sbjct: 1256 KAIVAMRFIDNKGQTSETYPYNPNGSPEGITSVTTPDGRFTVLMPHAERVFRSVQQSWHP 1315 Query: 1320 ESWGEDSPWMRMFRNARKWVG 1340 ESWGEDSPWMRMFRNARKWVG Sbjct: 1316 ESWGEDSPWMRMFRNARKWVG 1336 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 2,659,932 Number of extensions: 117645 Number of successful extensions: 315 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 310 Number of HSP's successfully gapped: 1 Length of query: 1340 Length of database: 1,000,347 Length adjustment: 93 Effective length of query: 1247 Effective length of database: 693,912 Effective search space: 865308264 Effective search space used: 865308264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)