BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2089.p (422 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094950|ref|YP_001100025.1| putative D-amino acid dehydroge... 296 1e-81 gi|134093986|ref|YP_001099061.1| D-amino acid dehydrogenase smal... 168 5e-43 gi|134093638|ref|YP_001098713.1| putative D-amino acid dehydroge... 160 1e-40 >gi|134094950|ref|YP_001100025.1| putative D-amino acid dehydrogenase small subunit [Herminiimonas arsenicoxydans] Length = 414 Score = 296 bits (757), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 169/409 (41%), Positives = 239/409 (58%), Gaps = 22/409 (5%) Query: 19 CSAYFLAAKGYEVAVIERRAHVAEEATFGDTGLLAPGVATPLTLPGAMATFACRF-QDEP 77 C+AYFLA G++V VIERR +VAEEA+FGD+G+LAP P PGA + + E Sbjct: 14 CTAYFLAEAGHQVVVIERRNNVAEEASFGDSGILAPASIAPWAAPGAAKSLLSHLLKSES 73 Query: 78 RVLLASGTDFGRRRWMGRTRQAQ--QYFAQNKLRLSRLSAYGQALTLQLQTHYNLEHENG 135 +L D RW+ R + + + N+ R+ R++ Y + QL+ + L++E Sbjct: 74 PLLFNRMLDPSMWRWIRRWLKECDIERYQINRNRMQRIAFYSDQIMRQLRELHQLDYEQA 133 Query: 136 NGVFHLFRLPAEAARMGQMQEAAEQCEF------KHQALDTEAIRALEPAFSSGAALAGA 189 G LFR + +Q A +F H D + RA+EPA + LAG+ Sbjct: 134 PGYLQLFRSERD------LQLAKPAFDFLAAHGIPHDFPDADGARAIEPALNPHTPLAGS 187 Query: 190 LYYPDDIAGNCVLFAKQMRNAAQELGVRFHFDSTVTAI-QAEFGGRVMLQLQSPHLASQM 248 L+ P D +GNC LF +QMR AQ +GV FHF V +I Q+E G V +Q++ A+ Sbjct: 188 LHLPTDESGNCPLFTRQMRQLAQAIGVEFHFGCNVKSIRQSEHG--VDIQIEDRSFAA-- 243 Query: 249 RVDAVVVTAGMSSAELLRPLDTDLPLRALQSYSALVPVKNPDDAPSMALYDDSYKVAMTR 308 D VV+ +G S++LL PL LP+ ++SYSA ++N + AP AL D+SYKVA+TR Sbjct: 244 --DRVVLASGADSSKLLAPLGLHLPVYPVKSYSATATIRNFESAPVAALMDESYKVAITR 301 Query: 309 LGGRIRISGLLGFVQPSQTLPPKALRNLLKIAGDYYPNAANYNQAHFWSNTMALLPHGLP 368 +G RIRISG+ + L L LLK+ D++P+A NYN A FWS T +LP G P Sbjct: 302 MGNRIRISGMAELGARTSDLRQAGLNTLLKVGYDWFPDACNYNTAAFWSGTSLMLPDGPP 361 Query: 369 LIGPTRQGNVFVNVGHGATGWAASVGSARLLADLVAGEETEIPTEGLLP 417 LIG T+ NV+VN+GHG+TGWA + GSAR+LAD+V+G +I +GL P Sbjct: 362 LIGATQVRNVYVNIGHGSTGWAMAAGSARVLADIVSGRTPDIDLDGLTP 410 >gi|134093986|ref|YP_001099061.1| D-amino acid dehydrogenase small subunit [Herminiimonas arsenicoxydans] Length = 443 Score = 168 bits (425), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 109/414 (26%), Positives = 198/414 (47%), Gaps = 10/414 (2%) Query: 7 QIAVIGGGLSGICSAYFLAAKGYEVAVIERRAHVAEEATFGDTGLLAPGVATPLTLPGA- 65 ++ V+G G+ G SA+FL G++V VI+R+ A+E +F + ++ A P P A Sbjct: 7 KVIVLGSGIIGTASAWFLNKAGHDVTVIDRQPGAAQETSFANGCQISVSHAEPWANPAAP 66 Query: 66 MATFACRFQDEPRVLLASGTDFGRRRW-MGRTRQAQQYFAQNKLR-LSRLSAYGQALTLQ 123 M +++ +L ++ + +W + R+ +R + + Y + + Sbjct: 67 MKVLKWLGKEDAPLLYRFRPEWLQWKWALNFLRECTPARTNENIRQIVAICEYSRQTLVG 126 Query: 124 LQTHYNLEHENGN-GVFHLFRLPAEAARMGQMQEAAEQCEFKHQALDTEAIRALEPAFSS 182 L+ +E++N N G+ H + E + ++ T+ + +EPA + Sbjct: 127 LRAETGIEYDNLNRGILHFYTEQKEFDDSLPAAKLMRDLGCPRDSISTDEVIRIEPALAR 186 Query: 183 -GAALAGALYYPDDIAGNCVLFAKQMRNAAQELGVRFHFDSTVTAIQAEFGGR----VML 237 + G + +D +G+ F + + E GV F F++TVT + E G + Sbjct: 187 IRDKIVGGDFTANDESGDVYKFTSGLAKKSAEAGVNFQFNTTVTRLITEGAGASAKITGV 246 Query: 238 QLQSPHLASQ-MRVDAVVVTAGMSSAELLRPLDTDLPLRALQSYSALVPVKNPDDAPSMA 296 ++ +P + + DA V+ G S L +PL DL + + YSA V +P APS++ Sbjct: 247 EIITPEGRHEVLHADAFVLAMGSFSTALAKPLGIDLMIYPGKGYSATYAVTDPSAAPSVS 306 Query: 297 LYDDSYKVAMTRLGGRIRISGLLGFVQPSQTLPPKALRNLLKIAGDYYPNAANYNQAHFW 356 L DD YK+ ++RLG R+R++G ++ L + + + +P+A +Y +W Sbjct: 307 LTDDGYKLVVSRLGDRLRVAGTCELNGYTRDLNTARCEAITRRTRELFPDACDYENPVYW 366 Query: 357 SNTMALLPHGLPLIGPTRQGNVFVNVGHGATGWAASVGSARLLADLVAGEETEI 410 + L P +P IG T+ N+F+N GHG GW GS R LAD+V+G + E+ Sbjct: 367 TGLRPLTPSNVPYIGKTKFSNLFLNTGHGTLGWTMGCGSGRALADIVSGHQPEV 420 >gi|134093638|ref|YP_001098713.1| putative D-amino acid dehydrogenase [Herminiimonas arsenicoxydans] Length = 442 Score = 160 bits (405), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 121/439 (27%), Positives = 206/439 (46%), Gaps = 38/439 (8%) Query: 7 QIAVIGGGLSGICSAYFLAAKGYEVAVIERRAHVAEEATFGDTGLLAPGVATPLTLPGAM 66 ++ V+G G+ G SA+FL G+EV VI+R+ A+E +F + ++ ATP A Sbjct: 2 KVIVLGSGIIGTASAWFLNKAGHEVTVIDRQPGAAQETSFANGCQISVSHATPWANKTAP 61 Query: 67 ATFACRFQDEPRVLL----------ASGTDFGRRRWMGRTRQAQQYFAQNKLRLSRLSAY 116 T E LL G +F R RT N ++ ++ Y Sbjct: 62 MTILKSLGKEDAPLLYRFRAEWLQWKWGVNFLRECMPART-------VHNIHQIVAIAEY 114 Query: 117 GQALTLQLQTHYNLEHEN-GNGVFHLFR----LPAEAARMGQMQEAAEQCEFKHQALDTE 171 + +++ +++++ G+ H + A M++ C D E Sbjct: 115 SRQTLQAVRSEVDIDYDCLTRGILHFYTSQKDFDESLASAAVMRDLG--CPRTPMTAD-E 171 Query: 172 AIRALEPAFSS-GAALAGALYYPDDIAGNCVLFAKQMRNAAQELGVRFHFDSTVTAIQAE 230 A++ LEPA + + GA + D +G+ F + AQE GV F F +TVT + E Sbjct: 172 AVK-LEPALAHIRPQIVGADFTETDESGDIYKFTTGLARKAQERGVHFQFSTTVTRLITE 230 Query: 231 FGG---RV----MLQLQSPHLASQMRVDAVVVTAGMSSAELLRPLDTDLPLRALQSYSAL 283 G RV ++ + H + DA V+ G S LL+PL L + + YSA Sbjct: 231 GSGAAARVTGVEVIDAEGRH--QTLHADAFVMALGSFSVPLLQPLGIQLMIYPGKGYSAT 288 Query: 284 VPVKNPDDAPSMALYDDSYKVAMTRLGGRIRISGLLGFVQPSQTLPPKALRNLLKIAGDY 343 P+ N + AP+++L DD YK+ ++RLG ++R++G F ++ L + + + Sbjct: 289 YPLVNAELAPTVSLIDDGYKLVLSRLGDKLRVAGTCEFNGYTRELNATRCAAITRRTREL 348 Query: 344 YPNAANYNQAHFWSNTMALLPHGLPLIGPTRQGNVFVNVGHGATGWAASVGSARLLADLV 403 +P+A +Y Q +W+ L P +P IG T+ N+F+N GHG+ GW GS R +AD++ Sbjct: 349 FPDACDYEQPAYWAGLRPLTPSNVPYIGKTKFSNLFLNTGHGSLGWTMGCGSGRAIADII 408 Query: 404 AGEETEIP--TEGLLPRDV 420 +G + ++ G+ PR + Sbjct: 409 SGHQPDVDFAFTGMAPRKM 427 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.134 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 712,102 Number of extensions: 26490 Number of successful extensions: 107 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 100 Number of HSP's successfully gapped: 3 Length of query: 422 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 338 Effective length of database: 723,567 Effective search space: 244565646 Effective search space used: 244565646 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)