BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2086.p (234 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094952|ref|YP_001100027.1| ABC transporter ATP-binding pro... 356 e-100 gi|134095406|ref|YP_001100481.1| lipoprotein releasing system AT... 193 8e-51 gi|134094169|ref|YP_001099244.1| macrolide ABC transporter ATP-b... 159 1e-40 gi|134095531|ref|YP_001100606.1| ABC transporter ATP-binding pro... 153 8e-39 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 130 6e-32 >gi|134094952|ref|YP_001100027.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 227 Score = 356 bits (914), Expect = e-100, Method: Compositional matrix adjust. Identities = 183/234 (78%), Positives = 200/234 (85%), Gaps = 7/234 (2%) Query: 1 MPASATASPAIIAAIEVLQLSKHVADVAAPSGRLTILSGIDFTVAAGTTVAIVGASGSGK 60 M S+T PAI E + L+K VAD +G LTIL +DFTV AG T+AIVGASGSGK Sbjct: 1 MSESSTVYPAI----EAINLTKRVADA---TGELTILQAVDFTVQAGDTLAIVGASGSGK 53 Query: 61 STLLGLLAGLDTPSEGSVRLDGEDIYALDEDGRALLRKRKLGFVFQSFQLLGHLNALENV 120 STLLGLLAGLDTPS+G+V+LDG DI+ALDEDGRA LRK K+G VFQSFQLLGHLNA+ENV Sbjct: 54 STLLGLLAGLDTPSDGTVKLDGIDIFALDEDGRAGLRKEKIGVVFQSFQLLGHLNAVENV 113 Query: 121 MLPLELRGDSQARTKAEQMLGRVGLGSRLKHYPKYLSGGEQQRVALARAFVTEPPLLFAD 180 MLPLELR D +AR KAE ML RVGL SRLKHYPKYLSGGEQQRVALARAFV+EPPLLFAD Sbjct: 114 MLPLELRNDGKAREKAEAMLARVGLSSRLKHYPKYLSGGEQQRVALARAFVSEPPLLFAD 173 Query: 181 EPTGSLDAATGESVIQLMFELNRERGSTLVLVTHDNGIAARCERTLTIAAGRLV 234 EPTGSLDAATGESVIQLMFELN+ER STLVLVTHD IAA C+RT+TIAAGRLV Sbjct: 174 EPTGSLDAATGESVIQLMFELNQERKSTLVLVTHDPSIAALCKRTITIAAGRLV 227 >gi|134095406|ref|YP_001100481.1| lipoprotein releasing system ATP-binding protein lolD [Herminiimonas arsenicoxydans] Length = 228 Score = 193 bits (490), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 104/196 (53%), Positives = 127/196 (64%), Gaps = 2/196 (1%) Query: 36 ILSGIDFTVAAGTTVAIVGASGSGKSTLLGLLAGLDTPSEGSVRLDGEDIYALDEDGRAL 95 +L GI+ + G VAIVGASGSGKSTLL LL GLDTPS GSV L +D +LDE R Sbjct: 24 VLKGINLDIVKGERVAIVGASGSGKSTLLHLLGGLDTPSAGSVTLLHQDFASLDEKTRGN 83 Query: 96 LRKRKLGFVFQSFQLLGHLNALENVMLPLELR--GDSQARTKAEQMLGRVGLGSRLKHYP 153 LR R LGFV+Q LL +AL+NV +PL +R QA A +L RVGL R+ H P Sbjct: 84 LRNRSLGFVYQFHHLLPEFSALDNVAMPLMIRRVPREQAHETARAILARVGLEHRVTHVP 143 Query: 154 KYLSGGEQQRVALARAFVTEPPLLFADEPTGSLDAATGESVIQLMFELNRERGSTLVLVT 213 LSGGE+QRVALARA VT+P + ADEPTG+LD T LM EL+R G+ V+VT Sbjct: 144 GELSGGERQRVALARALVTQPACVLADEPTGNLDRHTAHKTFDLMLELSRTLGTAFVIVT 203 Query: 214 HDNGIAARCERTLTIA 229 HD +A C+R L ++ Sbjct: 204 HDIELATHCDRILRLS 219 >gi|134094169|ref|YP_001099244.1| macrolide ABC transporter ATP-binding/membrane protein [Herminiimonas arsenicoxydans] Length = 655 Score = 159 bits (403), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 84/201 (41%), Positives = 126/201 (62%), Gaps = 3/201 (1%) Query: 36 ILSGIDFTVAAGTTVAIVGASGSGKSTLLGLLAGLDTPSEGSVRLDGEDIYALDEDGRAL 95 +L GID + G VAI+GASGSGKSTL+ +L LD P+ GS G D+ D RAL Sbjct: 35 VLHGIDLKIYEGEFVAIMGASGSGKSTLMNILGCLDRPTTGSYYFMGRDVSDFGRDERAL 94 Query: 96 LRKRKLGFVFQSFQLLGHLNALENVMLPLELRG--DSQARTKAEQMLGRVGLGSRLKHYP 153 LR+ GFVFQS+ L+ +A ENV +P G ++ +A+ +L +GL R H P Sbjct: 95 LRRDDFGFVFQSYNLIASASAAENVEVPAMYSGLPPAERHARAQALLTELGLADRSHHRP 154 Query: 154 KYLSGGEQQRVALARAFVTEPPLLFADEPTGSLDAATGESVIQLMFELNRERGSTLVLVT 213 LSGG+QQRV+++RA + ++ ADEPTG+LD+ +G+ V++L+ +L+ RG T++L+T Sbjct: 155 NQLSGGQQQRVSISRALMNGGRIILADEPTGALDSKSGQDVMKLLADLS-ARGHTVLLIT 213 Query: 214 HDNGIAARCERTLTIAAGRLV 234 H +A +R + I G ++ Sbjct: 214 HAKEVADHAQRLIEIKDGHIL 234 >gi|134095531|ref|YP_001100606.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 266 Score = 153 bits (386), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 81/203 (39%), Positives = 122/203 (60%), Gaps = 2/203 (0%) Query: 33 RLTILSGIDFTVAAGTTVAIVGASGSGKSTLLGLLAGLDTPSEGSVRLDGEDIYALDEDG 92 R ++G+ F + G + IVG SGSGK+TLL +++G+ P+EGSV + G+D++ L +D Sbjct: 56 RTMAVNGVSFDLYFGEMLFIVGPSGSGKTTLLSIISGILKPNEGSVIVKGQDLWQLSKDD 115 Query: 93 RALLRKRKLGFVFQSFQLLGHLNALENVMLPLELRGDS--QARTKAEQMLGRVGLGSRLK 150 A R +GFVFQ + L L ENV +PL L+ + A T+A++ L VGL R+ Sbjct: 116 LADFRLNTIGFVFQDYHLFPRLTTAENVAIPLILKKNKWGDAITEAKKYLDIVGLKERVD 175 Query: 151 HYPKYLSGGEQQRVALARAFVTEPPLLFADEPTGSLDAATGESVIQLMFELNRERGSTLV 210 P LSGGEQQRVA+ARA V+ P +L DEPT SLD TG ++ + + + ++ Sbjct: 176 IVPVKLSGGEQQRVAIARAMVSHPSILILDEPTASLDGDTGRKILAFVHDQILNEKTCIL 235 Query: 211 LVTHDNGIAARCERTLTIAAGRL 233 +VTHD I +R + + G++ Sbjct: 236 IVTHDTRIFEFADRIMYMEDGKI 258 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 130 bits (327), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 75/203 (36%), Positives = 109/203 (53%), Gaps = 12/203 (5%) Query: 20 LSKHVADVAAPSGRLTILSGIDFTVAAGTTVAIVGASGSGKSTLLGLLAGLDTPSEGSVR 79 +S V ++ G L+ + AG A++G SG GK+TLL ++AGL+ P G V Sbjct: 1 MSIEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVL 60 Query: 80 LDGEDIYALDEDGRALLRKRKLGFVFQSFQLLGHLNALENVMLPLELR------GDSQAR 133 LDGED A +R+R++GFVFQ + L H+ EN+ L +R +S + Sbjct: 61 LDGEDASARH------VRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIK 114 Query: 134 TKAEQMLGRVGLGSRLKHYPKYLSGGEQQRVALARAFVTEPPLLFADEPTGSLDAATGES 193 K ++L V L YP LSGG++QR+ALARA EP +L DEP G+LDA + Sbjct: 115 EKVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKE 174 Query: 194 VIQLMFELNRERGSTLVLVTHDN 216 + + + L+ E T + VTHD Sbjct: 175 LRRWLRRLHDELHVTSIFVTHDQ 197 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.135 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 346,866 Number of extensions: 12254 Number of successful extensions: 136 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 106 Number of HSP's successfully gapped: 49 Length of query: 234 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 155 Effective length of database: 740,042 Effective search space: 114706510 Effective search space used: 114706510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)