BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2083.p (639 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094954|ref|YP_001100029.1| putative peptidyl-prolyl cis-tr... 760 0.0 gi|134094945|ref|YP_001100020.1| peptidyl-prolyl cis-trans isome... 93 4e-20 gi|134094865|ref|YP_001099940.1| putative peptidyl-prolyl cis-tr... 79 1e-15 gi|134093645|ref|YP_001098720.1| periplasmic peptidyl-prolyl cis... 75 1e-14 >gi|134094954|ref|YP_001100029.1| putative peptidyl-prolyl cis-trans isomerase protein [Herminiimonas arsenicoxydans] Length = 636 Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/629 (62%), Positives = 491/629 (78%), Gaps = 4/629 (0%) Query: 1 MFDFIRTHQRLMQFLLLLFIFPSFAFFGLEGYSRLTDDSG-VAKVAGQTITKEEWDAAHR 59 MF+FIRTH+RLMQFLLLL I PSFAF GLE Y+ + D S VAKVA QTIT+ EWDAA R Sbjct: 1 MFEFIRTHRRLMQFLLLLIILPSFAFVGLESYTSMGDASNTVAKVADQTITQPEWDAAQR 60 Query: 60 QQLERMRQVYGNQFDAKIFDSPQARRAILDNLIAQRALGAEVVANKLVVPDQVLQQSILQ 119 +Q+ R RQ++G+QFDAK+FD+P+A++ IL+NLIAQR L AE NKL V DQ LQQ+I+ Sbjct: 61 EQMSRFRQMFGDQFDAKMFDTPEAKQEILNNLIAQRVLTAEAKRNKLAVTDQALQQTIVN 120 Query: 120 IPGLTKPDGSFDNEQYRVLLAAQGLTPKSYEASLRREMAVQQLNAAIQSTAFAPKTVAEN 179 + GLT DG FD E+Y+ +LAAQG+TP YEA LR+E+ QQ+NAAIQ+TAFAP ++A+ Sbjct: 121 MGGLTTADGKFDVERYKAILAAQGMTPTMYEARLRQELTSQQVNAAIQNTAFAPDSLAKR 180 Query: 180 LSNLNDQERTVQMLNFKPESYAAQVKISDDMLKAYYDKNGARFETPEQADIEYVVLDAAA 239 LS L +QER VQ L FK YA QVK++DDMLK+YY+K+ +F PEQ EYVVL A A Sbjct: 181 LSELGEQEREVQQLAFKTSDYAGQVKVTDDMLKSYYEKSN-QFNVPEQVKAEYVVLTADA 239 Query: 240 VAAQASVTDDDIKSYYEQNQKQYTTEEQRRASHILIAVKKDASAADKAAAKSKAEALVAQ 299 +AAQ +V+D DIKSYYEQN K Y EEQRRASHILI V KDAS A+KAAAK+KAE L+A Sbjct: 240 LAAQINVSDADIKSYYEQNAKHYGVEEQRRASHILIGVNKDASDAEKAAAKAKAEQLLAT 299 Query: 300 LRKNPGDFAKLAKADSQDPGSAENGGDLGYFGKGAMVKPFEDAAFSLKQGQISDPVESDF 359 L KNP +FAKLAK +S D GSAE GGDLG+FGKG MVKPFE+AAF LKQG++SD V+SD+ Sbjct: 300 LHKNPQEFAKLAKENSSDTGSAERGGDLGFFGKGMMVKPFEEAAFKLKQGELSDLVQSDY 359 Query: 360 GYHIIEVTGIKPAAVKPLDAVKAEIGAEIKKQIAAKKYSEMADQFNNLVYENGDSLKAVS 419 G+HII++T IKPA++K LD VK EI ++I+KQ+ AKKY+E AD F+N VYE DSLKAV+ Sbjct: 360 GFHIIKLTAIKPASIKTLDEVKNEIASDIRKQLVAKKYTETADVFSNTVYEQADSLKAVA 419 Query: 420 DKLKLKIQTASGVTRTPNPA-AGAAPYNNAKFLTALFTDDVIKGKHNSEAVQTAPNTLVA 478 DKLKLKI+T ++R PNPA A APYNN KFLTALF+D+ +K K N+EAV+ APNTL+A Sbjct: 420 DKLKLKIETTGDLSRQPNPAVAPTAPYNNQKFLTALFSDESLKNKRNTEAVEVAPNTLIA 479 Query: 479 GRMTSYKPVTKRPFDEVKAEVQKDVLAAEEQALAVKAGQERLAQLQAKDDATGFSDPKVV 538 GR+T YKP KRPFDEVKA V + V+ E ALA KAG+ +LA LQAKDDA+GFS ++V Sbjct: 480 GRVTEYKPAAKRPFDEVKAMVHERVVQEEAAALAKKAGEAKLAALQAKDDASGFSATQIV 539 Query: 539 SRVKSEGWTQEAFNAVMKADTAKLPAYAGAETTGLGYQIYRITKVEQPKTVDTARRKAEQ 598 SR KS+G F AVMKADT+KLPAY G + G+ + RI +V QP VD+A+R+AE Sbjct: 540 SRAKSQGLNPAVFLAVMKADTSKLPAYVGVDLPQ-GFGVLRIVRVTQPANVDSAKRQAEH 598 Query: 599 EQITAALSQQEALGYLDYLREKAKTKLLK 627 +QITAAL+QQE Y++ L++KAK K+L+ Sbjct: 599 QQITAALAQQETFAYIEALKQKAKVKILR 627 >gi|134094945|ref|YP_001100020.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Herminiimonas arsenicoxydans] Length = 258 Score = 92.8 bits (229), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 88/141 (62%), Gaps = 16/141 (11%) Query: 246 VTDDDIKSYYEQNQKQYTTEEQRRASHILIAVKKDASAADKAAAKSKAEALVAQLRKNPG 305 V D DIK+ Y++ + Q ++++ A HIL+ ++DA +A++A+L K Sbjct: 111 VKDADIKAEYDRFRAQ-ASDKEYHARHILVEKEEDA------------KAIIAKL-KGGA 156 Query: 306 DFAKLAKADSQDPGSAENGGDLGYFGKGAMVKPFEDAAFSLKQGQISD-PVESDFGYHII 364 F +LAK S+DPGSA+NGGDL + A VKPF DA SL++GQ+ D PV++ FGYH+I Sbjct: 157 KFEELAK-QSKDPGSADNGGDLDWAAPAAFVKPFSDAMVSLQKGQLYDTPVKTQFGYHVI 215 Query: 365 EVTGIKPAAVKPLDAVKAEIG 385 ++ ++ A + L+ VK +I Sbjct: 216 KLDDVRAAKIPTLEEVKPQIA 236 >gi|134094865|ref|YP_001099940.1| putative peptidyl-prolyl cis-trans isomerase (NifM related) [Herminiimonas arsenicoxydans] Length = 248 Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 81/158 (51%), Gaps = 8/158 (5%) Query: 238 AAVAAQASVTDDD---IKSYYEQNQKQYTTEEQRRASHILIAVKKDASAADKAAAKSKAE 294 A A + V D D ++Y +++T+ E A HIL V + E Sbjct: 62 ALFAQEVRVPDADEAACATFYRNQPQRFTSGELVEARHILFQVTPSVPLE---LLRETGE 118 Query: 295 ALVAQLRKNPGDFAKLAKADSQDPGSAENGGDLGYFGKGAMVKPFEDAAFSLKQGQISDP 354 A++A+LR +P FA+LA+ S + S GG+LG +G V FE F L +G+++D Sbjct: 119 AVLAELRVHPERFAELAREYS-NCASGTVGGNLGQLTRGQTVPEFEALVFRLPEGELADR 177 Query: 355 V-ESDFGYHIIEVTGIKPAAVKPLDAVKAEIGAEIKKQ 391 + E+ FG HI++V V PL+AVKA+I + +Q Sbjct: 178 LLETRFGLHIVQVLRRVAGEVVPLEAVKAQIADHLSRQ 215 >gi|134093645|ref|YP_001098720.1| periplasmic peptidyl-prolyl cis-trans isomerase (PPIase), involved in maturation of outer membrane proteins [Herminiimonas arsenicoxydans] Length = 469 Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 59/103 (57%), Gaps = 4/103 (3%) Query: 264 TEEQRRASHILIAVKKDASAADKAAAKSKAEALVAQLRKNPGDFAKLAKADSQDPGSAEN 323 T +Q ASHILI V + SAAD A+ K L +L F +LA+ S D SA Sbjct: 321 TVKQTHASHILIKVNQVVSAAD---ARRKLTELKQRLDNKAATFEELARLHSND-FSASK 376 Query: 324 GGDLGYFGKGAMVKPFEDAAFSLKQGQISDPVESDFGYHIIEV 366 GGDLG+ G V FE A +L G++S+P+ES FGYH+I V Sbjct: 377 GGDLGWIYPGDTVPEFERAMDALPVGEVSEPIESPFGYHLILV 419 Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/130 (35%), Positives = 74/130 (56%), Gaps = 3/130 (2%) Query: 246 VTDDDIKSYY-EQNQKQYTTEEQRRASHILIAVKKDASAADKAAAKSKAEALVAQLRKNP 304 V+D ++ +Y E + ++ ILI V ++A+ A ++ +AE ++AQL Sbjct: 180 VSDAEVDAYMAEHSGTNANAPQELNLGQILIRVPENATPQQLADSRKRAEEVLAQLNAG- 238 Query: 305 GDFAKLAKADSQDPGSAENGGDLGYFGKGAMVKPFEDAAFSLKQGQISDPVESDFGYHII 364 GDFAKLA A S D GG+LG+ + + + F DA SL+QGQI+ V+S G+HI+ Sbjct: 239 GDFAKLAAAYS-DGTDGLTGGELGWRTQDRLPQLFVDATASLQQGQIAPLVKSGNGFHIL 297 Query: 365 EVTGIKPAAV 374 +V G + +V Sbjct: 298 KVLGKRTQSV 307 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.313 0.128 0.347 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 992,195 Number of extensions: 36217 Number of successful extensions: 128 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 117 Number of HSP's successfully gapped: 5 Length of query: 639 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 551 Effective length of database: 710,387 Effective search space: 391423237 Effective search space used: 391423237 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)