BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2082.p
         (174 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096505|ref|YP_001101580.1| hypothetical protein HEAR3356 [...   162   1e-41

>gi|134096505|ref|YP_001101580.1| hypothetical protein HEAR3356
           [Herminiimonas arsenicoxydans]
          Length = 152

 Score =  162 bits (409), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/161 (57%), Positives = 117/161 (72%), Gaps = 12/161 (7%)

Query: 14  RLAISGVGVAAMLAACSAPESTQQERDALARSLIEQKKTTEDATSTATTPDGYKVDLARR 73
           RL I  + +A  LA C         +  L RS +E   TT D TSTA T   YK+ LA+R
Sbjct: 4   RLTICLLALA--LAGCGG-------KAVLDRSEVE---TTGDGTSTADTVGEYKLALAQR 51

Query: 74  ISQVNFTSVYVERPQALLRSVIVIKYVVDGDGNLIKSEILRSNRDKHAEASALSSLKSAA 133
           I+QVN T VY+ RPQALLRSV+V+KYVVD  G+L++SEI+RSNRD+  EA+AL+SL+S A
Sbjct: 52  IAQVNSTKVYIGRPQALLRSVVVVKYVVDAKGSLLRSEIMRSNRDRSTEATALASLRSTA 111

Query: 134 PFPKPPPALLKQGRIELSESWLFNNDGRFQLRSVALAQMDQ 174
           PFPKP  +LL+ GRIEL E+WLFNNDGRFQLR++A  QMD+
Sbjct: 112 PFPKPAASLLRHGRIELMETWLFNNDGRFQLRTIAEPQMDE 152


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.128    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 239,469
Number of extensions: 6237
Number of successful extensions: 26
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 98
Effective length of database: 749,927
Effective search space: 73492846
Effective search space used: 73492846
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)