BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2081.p (377 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 250 9e-68 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 241 4e-65 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 231 4e-62 gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-bin... 154 7e-39 gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 147 6e-37 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 250 bits (638), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 148/349 (42%), Positives = 202/349 (57%), Gaps = 33/349 (9%) Query: 26 FLSVRAIEKRFGAFTALDRVSLEVRQGEMVCLLGPSGCGKTTLLRTIAGLERQDAGQIVA 85 L +R + +RFG T +D +SL + GE LLGPSGCGKTTLLR IAG + DAG+I+ Sbjct: 3 LLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILL 62 Query: 86 AGRDISQLPPQSRDYGILFQSYALFPNLSVADNVAYGL--TGMKRQARQERVAAMLDMVG 143 G D++ +PP+ R +FQ+YALFP+++VA N+A+ L + +++V L+ V Sbjct: 63 DGVDLTGVPPEQRVVRTVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKVDEALEDVR 122 Query: 144 LAGSQAKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIRRLQKQ 203 L G A+YP +LSGGQ+QRV++ARAL P LLLLDEPLSALDAQ+RE +Q+E+ LQK+ Sbjct: 123 LTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQKE 182 Query: 204 FRITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPAEVYRRPASPFVADFIGHANWLPF 263 IT + VTHDQ EA+ ++ RIAVM G IEQ P +Y P S FVADFIG N Sbjct: 183 VGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVADFIGTCNLFDG 242 Query: 264 TRVSGSQVAVGTLRLEVQPEEAELA----------SGRLFCRPEAVELFASPACA----N 309 T +Q+A T+ L+V A A G + RPE +++ A N Sbjct: 243 TV---TQIAGDTMLLDVPGMGAVKALTVAGVQVGSKGTIALRPEKIQVSAEIVGGVPDEN 299 Query: 310 RFQARVVDRIYLGNRYRLALAADALPGQSLLADVSTEAHERIAALPANA 358 F V + +Y+G G ++ V TE RI L AN+ Sbjct: 300 HFDGYVKELLYMG-------------GVTVYI-VETEGGVRIETLLANS 334 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 241 bits (615), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 121/239 (50%), Positives = 162/239 (67%), Gaps = 6/239 (2%) Query: 27 LSVRAIEKRFGAFTALDRVSLEVRQGEMVCLLGPSGCGKTTLLRTIAGLERQDAGQIVAA 86 + V+ I K+FG F AL+ VSLE GE+ LLGPSGCGKTTLLR IAGLE+ D GQ++ Sbjct: 3 IEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 87 GRDISQLPPQSRDYGILFQSYALFPNLSVADNVAYGL------TGMKRQARQERVAAMLD 140 G D S + R G +FQ YALF +++V +N+A+GL T +E+V +L+ Sbjct: 63 GEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKVTKLLE 122 Query: 141 MVGLAGSQAKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIRRL 200 +V L +YP QLSGGQ+QR+ALARALA P +LLLDEP ALDA+VR+ L+ +RRL Sbjct: 123 LVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRL 182 Query: 201 QKQFRITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPAEVYRRPASPFVADFIGHAN 259 + +T++ VTHDQEEA+ +AD+I +M G +EQ G P +VY PASPFV F+G+ N Sbjct: 183 HDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVYGFLGNVN 241 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 231 bits (590), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 144/322 (44%), Positives = 185/322 (57%), Gaps = 34/322 (10%) Query: 45 VSLEVRQGEMVCLLGPSGCGKTTLLRTIAGLERQDAGQIVAAGRDISQL----PPQSRDY 100 +S +++G++ CLLG SGCGKTT+LR IAG E G I G++IS P++R Sbjct: 37 LSFALQRGQIGCLLGQSGCGKTTVLRAIAGFEPLTEGSITLGGKEISNAHFTATPETRQI 96 Query: 101 GILFQSYALFPNLSVADNVAYGLTGMKRQARQERVAAMLDMVGLAGSQAKYPGQLSGGQQ 160 G++FQ YALFP+LSVADNV +GL + RQ R+AA+L +VGLA K+P +LSGGQQ Sbjct: 97 GVVFQDYALFPHLSVADNVGFGLRKLAAPERQARIAALLTLVGLASQGKKFPHELSGGQQ 156 Query: 161 QRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIRRLQKQFRITTLMVTHDQEEAMV 220 QRVALARALAP P LLLLDEP S LD +RE L E+R + K+ T ++VTHDQ EA Sbjct: 157 QRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKEVGTTAVLVTHDQHEAFA 216 Query: 221 MADRIAVMQHGRIEQFGTPAEVYRRPASPFVADFIGHANWLPFTRVSGSQVAVGTLRLEV 280 +AD+I VMQ G I Q+ + +Y RPA+ FVADFIG + P G + + Sbjct: 217 IADQIGVMQDGVIVQWDSAYNLYHRPANRFVADFIGLGVFTP-----------GIIDQQT 265 Query: 281 QPEEAELAS-----GRLFCRPEA-------VELFASPACANR---FQARVVDRIYLGNRY 325 Q EL S G C P A V L A + QA VV + + G + Sbjct: 266 QNVNIELGSLPLCHGMETCDPNAPDGQQVDVLLRADDVVHDDTSPLQAEVVRKAFRGADF 325 Query: 326 RLALAADALP-GQSLLADVSTE 346 L LP GQ LLA V + Sbjct: 326 LYTL---KLPSGQLLLALVPSH 344 >gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 271 Score = 154 bits (389), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 134/228 (58%), Gaps = 14/228 (6%) Query: 25 RFLSVRAIEKRF----GAFTALDRVSLEVRQGEMVCLLGPSGCGKTTLLRTIAGLERQDA 80 +F+ ++ E F G F AL ++L V +GE + L+G SGCGK+TLL IAGL + Sbjct: 7 KFIDIQHAEMSFHTKKGVFNALTDINLTVAKGEFITLIGHSGCGKSTLLNLIAGLTQSTG 66 Query: 81 GQIVAAGRDISQLPPQSRDYGILFQSYALFPNLSVADNV------AYGLTGMKRQARQER 134 G ++ R+I+ P+ ++FQ+++L P L+ +NV +G K + R R Sbjct: 67 GMLLCGNREIAGPSPER---AVVFQNHSLLPWLTCYENVYLAVERVFGKVEGKAKLRA-R 122 Query: 135 VAAMLDMVGLAGSQAKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQ 194 A L +VGL ++ K P ++SGG +QRV +ARAL+ P +LL+DEP ALDA R HLQ Sbjct: 123 TRAALSLVGLTHAEQKRPNEISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQ 182 Query: 195 LEIRRLQKQFRITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPAEV 242 E+ ++ T +MVTHD +EA++++D+I ++ +G G EV Sbjct: 183 DELLKIVAATGSTVVMVTHDVDEAVLLSDKIVMLTNGPSATIGEILEV 230 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 147 bits (372), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 87/236 (36%), Positives = 134/236 (56%), Gaps = 8/236 (3%) Query: 27 LSVRAIEKRFGAFTALDRVSLEVRQGEMVCLLGPSGCGKTTLLRTIAGLERQDAGQIVAA 86 + ++ + K +G+F L+ + V +G++V + GPSG GK+TL++T+ GLE G I Sbjct: 2 IEMKNVSKWYGSFQVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSITVD 61 Query: 87 GRDI----SQLPPQSRDYGILFQSYALFPNLSVADNVAYG---LTGMKRQARQERVAAML 139 G + + LP G++FQ++ LFP+LS+ +N+ G + G + ER L Sbjct: 62 GISVGDPKTNLPALRSRIGMVFQNFELFPHLSIRENLTLGQIRVLGRSEEEAAERGLKYL 121 Query: 140 DMVGLAGSQAKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIRR 199 D VGL + K+PGQLSGGQQQRVA+ARALA P +L DEP SALD ++ + L++ Sbjct: 122 DRVGLIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINEV-LDVMV 180 Query: 200 LQKQFRITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPAEVYRRPASPFVADFI 255 Q +T ++VTH+ A +A+R+ M G I + T E + S DF+ Sbjct: 181 GLAQDGMTMMVVTHEMGFARKVANRVIFMDQGTIVEDCTKDEFFGTVRSDRARDFL 236 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 657,360 Number of extensions: 25061 Number of successful extensions: 217 Number of sequences better than 1.0e-08: 49 Number of HSP's gapped: 166 Number of HSP's successfully gapped: 52 Length of query: 377 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 294 Effective length of database: 726,862 Effective search space: 213697428 Effective search space used: 213697428 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)