BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2080.p (580 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094077|ref|YP_001099152.1| sulfate ABC transporter membran... 62 7e-11 gi|134096009|ref|YP_001101084.1| spermidine/putrescine ABC trans... 61 2e-10 gi|134094642|ref|YP_001099717.1| putative transmembrane ABC tran... 57 3e-09 gi|134095674|ref|YP_001100749.1| thiosulfate permease W [Hermini... 57 3e-09 >gi|134094077|ref|YP_001099152.1| sulfate ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 287 Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 12/158 (7%) Query: 97 VTAVVTVPLAYVFAYALQRTCIPCKGLWRGIGLL------PLLAPSLLPGIALIYLFGNQ 150 +TA + VPL +F A CI K +RG L P ++ G+ + LFG Q Sbjct: 70 ITAAIAVPLNLIFGVA-ASWCI-AKFDFRGKSFLLTLIDLPFSVSPVISGLIYVLLFGAQ 127 Query: 151 GLFKEWMDGS----IYGFWGILLGEVFYTFPHAMMILLSALSQADGRLYDAAHAMGASRW 206 G F W+ ++ GI+L +F TFP L+ + +AA +GAS W Sbjct: 128 GWFGGWLIEHNIKILFAVPGIVLATIFVTFPFVARELIPLMQSQGSEEEEAALVLGASGW 187 Query: 207 RIFTTVTLPATRYGLFGALCLVFTLTITDFGVPKITGG 244 + F VTLP ++GL + L + +FG + G Sbjct: 188 KTFWHVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSG 225 >gi|134096009|ref|YP_001101084.1| spermidine/putrescine ABC transporter inner membrane protein [Herminiimonas arsenicoxydans] Length = 258 Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 11/170 (6%) Query: 78 LFSHINFLPLLGRSLWVSAVTAVVTVPLAYVFAYALQRTCIPCKGLWRGIGLLPLLAPSL 137 LF+ L G SL ++ V++ V+ L + +AL R I + + L P+ P + Sbjct: 53 LFADEEMLRAAGNSLIIALVSSAVSTVLGTMAGFALHRYKIRTLQI---LVLTPIAIPEI 109 Query: 138 LPGIALIYLFGNQGLFKEWMDGSIYGFWGILLGEVFYTFPHAMMILLSALSQADGRLYDA 197 L G++L+ F M G ++L + ++ +++ S LS D L +A Sbjct: 110 LVGVSLLIFF--------VMLNITLGMLSVMLAHIAFSLGFVAIVVRSRLSGMDESLTEA 161 Query: 198 AHAMGASRWRIFTTVTLPATRYGLFGALCLVFTLTITDFGVPKITGGAYS 247 A GA+ W+ F VTLP G+ + FTL+I DF + T GA + Sbjct: 162 ARDCGATPWQAFRRVTLPLIMPGVVAGALMAFTLSIDDFVITFFTAGANT 211 >gi|134094642|ref|YP_001099717.1| putative transmembrane ABC transporter protein [Herminiimonas arsenicoxydans] Length = 222 Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 24/208 (11%) Query: 86 PLLGRSLWVSAVTAVV----TVPLAYVFAYALQRTCIPCKGLWRGIGLLPLLAPSLLPGI 141 P+L + +W+S T++V P+A +F Y + + + I L P++L G+ Sbjct: 7 PVLWKIVWISLKTSIVGLSIATPIAVLFGYLIATHDFIGRRIVIWIAQAALSLPTVLIGL 66 Query: 142 ALIYLFGNQGLFK--EWMDGSIYGFWGILLGEVFYTFPHAMMILLSALSQADGRLYDAAH 199 L + QG +W+ + ++LG+V P + LSA+ AD RL + A Sbjct: 67 LLYLMLSRQGPLGSLQWL----FTQSSVILGQVLIVLPVLIAFTLSAVQAADPRLAETAT 122 Query: 200 AMGASRWRIFTTVTLPATRYGLFGALCLVFTLTITDFGVPKITGGAY--------SVLAV 251 GASRWR+ TV L R+G+ A+ F I++ G + GG + +A+ Sbjct: 123 VHGASRWRVMLTV-LYEVRFGVMAAVINGFGRVISEVGCAMMVGGNIAGETRTITTAIAL 181 Query: 252 EAYKAVVGQQQFGRGALIGLLLLVPALL 279 E K +F +G +G++L+ ALL Sbjct: 182 ETSKG-----EFAQGIALGIVLVAFALL 204 >gi|134095674|ref|YP_001100749.1| thiosulfate permease W [Herminiimonas arsenicoxydans] Length = 283 Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 21/225 (9%) Query: 28 TDRSQWLLAAFKWLLLALLALGLVGPLWFILAQAFMKPEGGWAGIQPFVDLFSHINFLPL 87 T QW+L +L L+ L+ PL I QAF GG V+L Sbjct: 9 TSAHQWILIGLGIVLTILM---LIVPLILIFTQAF---SGG-------VELLRQNLSEDY 55 Query: 88 LGRSLWVSAVTAVVTVPLAYVF----AYALQRTCIPCKGLWRGIGLLPLLAPSLLPGIAL 143 + +L ++ + AV+TVP+ VF A+ + + L + +P ++ G Sbjct: 56 MQHALGLTLLAAVLTVPINLVFGILLAWCVTHYDFFGRRLLITLVEIPYATSPVVAGFCY 115 Query: 144 IYLFGNQGLFKEWM---DGSIYGFW-GILLGEVFYTFPHAMMILLSALSQADGRLYDAAH 199 + ++G +G+ +W+ D + W GI++ VF T P+ IL+ + + AA Sbjct: 116 LVVYGLEGVIGQWLYEKDVQLMFAWPGIIMVTVFVTAPYIARILMPLMQKQGTEEEIAAL 175 Query: 200 AMGASRWRIFTTVTLPATRYGLFGALCLVFTLTITDFGVPKITGG 244 ++GA+ W+IF VTLP ++ L + + +FG + G Sbjct: 176 SLGATGWQIFRHVTLPNIKWALLYGAVITNARAVGEFGAVAVVSG 220 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.328 0.140 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 925,216 Number of extensions: 30818 Number of successful extensions: 169 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 164 Number of HSP's successfully gapped: 9 Length of query: 580 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 493 Effective length of database: 713,682 Effective search space: 351845226 Effective search space used: 351845226 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)