BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2079.p
         (343 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096593|ref|YP_001101668.1| putative regulatory lipoprotein...    74   9e-15

>gi|134096593|ref|YP_001101668.1| putative regulatory lipoprotein
           [Herminiimonas arsenicoxydans]
          Length = 450

 Score = 74.3 bits (181), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 108/258 (41%), Gaps = 6/258 (2%)

Query: 30  LTVYTALEADQIKAYQAAFQKANPDIEIKWVRDSTGIVTAKLLAEKANPQADVIWGLAAT 89
           + V T+   + +  ++A F+K +P   ++ +   +G   + L  +K     DV W  A  
Sbjct: 34  VVVMTSYPEEVVSRFEAGFEKTHPGTRVEILWRHSGDARSYLRDQKQQ-NVDVYWSPAQR 92

Query: 90  SLALLDKEGMLTPYAPH--GLSAIDAKYRSAANPPSWVGMDVWASAICFNTVEAQKQGLP 147
           +   L +EG          GL A    +  +     +   ++      FN    +++GLP
Sbjct: 93  NFLTLAREGAFRKLDIDMTGLPARVGGFPISDPAGFYAATEIAGYGFAFNPQRLKEKGLP 152

Query: 148 KPTSWADLTKPVYAGKIVMPNPASSGTGYLDVSAWLQMMGEEKGWAYMDALHKNIGQYTH 207
           +P  W +L+   +  +IV P P   G   L +   LQ  G +KGW  +  +  N      
Sbjct: 153 QPRQWTELSDQKWKDEIVFPIPGKVGFAPLLIDIILQGYGWDKGWEILQGIGSNAQLLGQ 212

Query: 208 SGSKPCKQAATGEFPIGIAFEYRAVKTKKEGAPIDVILPSEGL-GWDIEATAIVKGSKNL 266
            G     + ++G   +G++ ++        GAPI    P  G+ G+     AI+K + +L
Sbjct: 213 GGQHISDEVSSGRASVGVSIDFFIKAAIANGAPIQFAYP--GITGYSPAHVAIMKNAPHL 270

Query: 267 EAAKKLADFSASKDAMAL 284
           + A+  A +  S +   +
Sbjct: 271 KNARAFAAYVLSAEGQKI 288


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.129    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 686,620
Number of extensions: 28549
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 261
Effective length of database: 730,157
Effective search space: 190570977
Effective search space used: 190570977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 129 (54.3 bits)