BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2077.p (553 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094613|ref|YP_001099688.1| putative sugar transport protei... 946 0.0 gi|134096160|ref|YP_001101235.1| MFS family transporter [Hermini... 144 8e-36 gi|134095871|ref|YP_001100946.1| putative transporter protein [H... 100 2e-22 >gi|134094613|ref|YP_001099688.1| putative sugar transport protein [Herminiimonas arsenicoxydans] Length = 554 Score = 946 bits (2446), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/549 (83%), Positives = 508/549 (92%), Gaps = 1/549 (0%) Query: 5 SVNTTTR-GITKEEKKVIFASSLGTVFEWYDFYLYGSLAAIIAKQFFAGTDPNTAFIFAL 63 +V T R GIT EE+KVIFASSLGTVFEWYDFYLYGSLAAIIAKQFFAGTDPNTAFIFAL Sbjct: 3 TVATAGRNGITAEERKVIFASSLGTVFEWYDFYLYGSLAAIIAKQFFAGTDPNTAFIFAL 62 Query: 64 LAFAAGFIVRPFGALVFGRLGDLVGRKYTFLVTILIMGASTFIVGVLPNYNSIGITAPII 123 LAFAAGF+VRPFGA+VFGRLGD++GRKYTFLVTI+IMG STF+VG+LPNY SIG+ AP+I Sbjct: 63 LAFAAGFLVRPFGAIVFGRLGDMIGRKYTFLVTIVIMGGSTFVVGLLPNYASIGLAAPVI 122 Query: 124 LIILRILQGLALGGEYGGAATYVAEHAPEGRRGSFTAWIQTTATMGLFLSLLVILGVRTS 183 LIILRILQGLALGGEYGGAATYVAEHAP G+RG+FT+WIQTTATMGLF+SLLVILG RT+ Sbjct: 123 LIILRILQGLALGGEYGGAATYVAEHAPHGKRGAFTSWIQTTATMGLFMSLLVILGTRTA 182 Query: 184 VGEAAFADWGWRIPFLVSILLLAISVWIRMSMNESPAFLKMKAEGKTSKAPLTEAFGQWK 243 +GE AFADWGWRIPFLVS+ LL ISVWIR+SM ESPAF+KMKAEGKTSKAPLTEAF +W Sbjct: 183 MGEEAFADWGWRIPFLVSVFLLGISVWIRLSMAESPAFVKMKAEGKTSKAPLTEAFAKWG 242 Query: 244 NLKLVILALVGLTAGQAVVWYTGQFYALFFLTQTLKVDGPTANLLIAAALLLATPFFLFF 303 NLK+VILALVGLTAGQAVVWYTGQFYALFFLTQTLKVDG TAN+LIAA+LLL TPFF+ F Sbjct: 243 NLKIVILALVGLTAGQAVVWYTGQFYALFFLTQTLKVDGATANILIAASLLLGTPFFVIF 302 Query: 304 GSLSDKIGRKPIILGGCLIAAVTYFPIFNGLTHFANPALEAALQKSPVIVTADPASCQFQ 363 G+LSDKIGRKPII+ GCLIAA+TYFPIF+GLTH+ANPALEAAL+ SPV+VTADPA+CQFQ Sbjct: 303 GTLSDKIGRKPIIMAGCLIAALTYFPIFSGLTHYANPALEAALKDSPVVVTADPATCQFQ 362 Query: 364 FNPTGTKKFTSSCDIVKAKLSAASVNYQNVAGAPGSVATVKIGERIITSYDATGLSKEEA 423 FNPTGTKKFTSSCDIVKAKL+AASV Y N APG++ATVKIG+ ++TS+DA GLSKE+A Sbjct: 363 FNPTGTKKFTSSCDIVKAKLAAASVAYSNEDAAPGTIATVKIGDTMLTSFDAKGLSKEDA 422 Query: 424 AAKDKELSKALADDIKAAGYPAKADPEQINKPMVLLLLFILVIYVTMVYGPIAACLVEMF 483 AAKDK SK LAD IKA GYP KADP QIN M LLLLFILVIYVTMVYGPIAA LVEMF Sbjct: 423 AAKDKAFSKELADSIKAHGYPTKADPAQINYGMTLLLLFILVIYVTMVYGPIAAMLVEMF 482 Query: 484 PTRIRYTSMSMPYHIGNGWFGGLLPTTSFALVAFKGDIYYGLWYPIVIALITFVIGMLFV 543 PTRIRYTSMS+PYHIGNGWFGGLLPTT+FALVAFKGDIYYGLWYPI+IAL+TFV+GM+FV Sbjct: 483 PTRIRYTSMSLPYHIGNGWFGGLLPTTAFALVAFKGDIYYGLWYPIIIALMTFVVGMIFV 542 Query: 544 KETVRNNIH 552 +ET N+I+ Sbjct: 543 RETKDNDIY 551 >gi|134096160|ref|YP_001101235.1| MFS family transporter [Herminiimonas arsenicoxydans] Length = 429 Score = 144 bits (364), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 89/232 (38%), Positives = 135/232 (58%), Gaps = 1/232 (0%) Query: 15 KEEKKVIFASSLGTVFEWYDFYLYGSLAAII-AKQFFAGTDPNTAFIFALLAFAAGFIVR 73 + V+FAS +GT E++DFY+Y + A ++ FF + P A + +L FA F R Sbjct: 12 NKPGTVLFASLIGTTIEFFDFYIYATAAVLVFPTLFFPSSSPTAAMLQSLATFAIAFFAR 71 Query: 74 PFGALVFGRLGDLVGRKYTFLVTILIMGASTFIVGVLPNYNSIGITAPIILIILRILQGL 133 P G+ VFG GD +GRK T + +L MG ST +G+LP Y +IG AP++L + R QGL Sbjct: 72 PIGSAVFGHYGDRIGRKATLVAALLTMGISTVAIGLLPTYAAIGTFAPLLLALCRFGQGL 131 Query: 134 ALGGEYGGAATYVAEHAPEGRRGSFTAWIQTTATMGLFLSLLVILGVRTSVGEAAFADWG 193 LGGE+GGA E+AP G+ + + Q A +G FLS + L + + F +G Sbjct: 132 GLGGEWGGAVLLATENAPPGKIAWYGCFPQLGAPLGFFLSGGIFLLLGEVLTNEQFFSYG 191 Query: 194 WRIPFLVSILLLAISVWIRMSMNESPAFLKMKAEGKTSKAPLTEAFGQWKNL 245 WRIPFL S +L+ + +++R+ + E+PAF K+ +G+ K PL F + + Sbjct: 192 WRIPFLASAVLVLVGLYVRLKITETPAFQKVLDKGERVKIPLATVFSEHGRM 243 >gi|134095871|ref|YP_001100946.1| putative transporter protein [Herminiimonas arsenicoxydans] Length = 449 Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 122/243 (50%), Gaps = 6/243 (2%) Query: 7 NTTTRGITKEEKKVIFASSLGTVFEWYDFYLYGSLAAIIAKQFF---AGTDPNTAFIFAL 63 N R + ++ +G E++DF++Y + ++ F A T + F + Sbjct: 26 NINARDGHIDPGEIAIGVVIGRASEYFDFFVYAIASVLVFPTVFFPFASKLEGTLYAFTI 85 Query: 64 LAFAAGFIVRPFGALVFGRLGDLVGRKYTFLVTILIMGASTFIVGVLPNYNSIGITAPII 123 +FA FI RP G ++F + R+ + + ++G ST + LP++ +G TA ++ Sbjct: 86 FSFA--FIARPVGTVIFMEIQRRFSREAKLTLALFLLGGSTAGIAFLPSHAQLGTTAIVL 143 Query: 124 LIILRILQGLALGGEYGGAATYVAEHAPEGRRGSFTAWIQTTATMGLFLSLLVILGVRTS 183 L +LR QG+ALGG + G + +A +AP+ +RG + Q A +G L+ + + + Sbjct: 144 LALLRCGQGVALGGSWDGLPSLLALNAPQNKRGWYAMLGQLGAPIGFILAAGLFAYMLYT 203 Query: 184 VGEAAFADWGWRIPFLVSILLLAISVWIRMSMNESPAFLKMKAEGKTSKAPLTE-AFGQW 242 + F +WGWR PF V+ + ++++ R+ + +P + ++ E + A + E Q Sbjct: 204 LAPQDFFEWGWRYPFFVAFAINVVALFARLRLVSTPEYSRLLDERELEPANVVEITRSQG 263 Query: 243 KNL 245 +NL Sbjct: 264 RNL 266 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.325 0.140 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 899,276 Number of extensions: 32169 Number of successful extensions: 186 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 181 Number of HSP's successfully gapped: 3 Length of query: 553 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 467 Effective length of database: 716,977 Effective search space: 334828259 Effective search space used: 334828259 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)