BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2067.p (532 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094319|ref|YP_001099394.1| ABC transporter ATP-binding pro... 987 0.0 gi|134094544|ref|YP_001099619.1| ABC transporter ATP-binding pro... 301 4e-83 gi|134095629|ref|YP_001100704.1| ABC transporter ATP-binding pro... 244 5e-66 gi|134096461|ref|YP_001101536.1| putative ABC transporter ATP-bi... 233 2e-62 gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter AT... 105 7e-24 >gi|134094319|ref|YP_001099394.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 533 Score = 987 bits (2551), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/533 (88%), Positives = 503/533 (94%), Gaps = 1/533 (0%) Query: 1 VLSTANITMQFGAKPLFENISVKFGDGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSL 60 +LSTANITMQFG KPLFENISVKFGDGNRYGLIGANGCGKSTFMKILGGDL+PSAG V L Sbjct: 1 MLSTANITMQFGPKPLFENISVKFGDGNRYGLIGANGCGKSTFMKILGGDLDPSAGTVML 60 Query: 61 DVNERLGKLRQDQFAYEEMRVLDVVMMGHVEMWAAMSERDAIYANPDATDDDYMKAADLE 120 D NERLGKLRQDQFA+EEMRVLDVVMMGH EMWAAMSERDAIYANP+ATDDDYMKAADLE Sbjct: 61 DPNERLGKLRQDQFAFEEMRVLDVVMMGHTEMWAAMSERDAIYANPEATDDDYMKAADLE 120 Query: 121 AKFAEYDGYTAEARAGELLLGVGVPIEQHNGPMSNVAPGWKLRVLLAQALFSNPDILLLD 180 AKFAEYDGYTAE+RAGELLLG GV I+ H GPMSNV+PGWKLRVLLAQALFSNPDILLLD Sbjct: 121 AKFAEYDGYTAESRAGELLLGAGVAIDLHQGPMSNVSPGWKLRVLLAQALFSNPDILLLD 180 Query: 181 EPTNNLDINTIRWLEEVLNERNSTMIIISHDRHFLNQVCTHMADMDYGTLKIYPGNYDDY 240 EPTNNLDINTIRWLE+VLNERNSTMIIISHDRHFLNQVCTH+ADMDYGTLKIYPGNYDDY Sbjct: 181 EPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNQVCTHVADMDYGTLKIYPGNYDDY 240 Query: 241 MLASSQARAQQLAANAKAKEKVAELQDFVRRFSANKSKARQATSRAKQIDKIKVEDIKPS 300 M AS+QAR QQLA NAKAK+KVAELQ+FVRRF+ANKSKARQATSRAKQI+KIKV+DIKPS Sbjct: 241 MFASTQARNQQLANNAKAKDKVAELQEFVRRFAANKSKARQATSRAKQIEKIKVDDIKPS 300 Query: 301 SRVNPFVRFEGEKKLHRLAVETQSITKTYDRDIFKNFSIMVEAGEKIAIIGANGAGKTTL 360 SR PFVRF+GEKKLHRLAVE ++I+K YDR +FKNFSIMVEAGE+IAIIGANGAGKTTL Sbjct: 301 SRAYPFVRFDGEKKLHRLAVEAETISKAYDRQLFKNFSIMVEAGERIAIIGANGAGKTTL 360 Query: 361 LRSIGG-DVAGLHPDSGEVKWAENANVGYMPQDPTEEFAGGETLTDWMGKWTQEGDDDQA 419 LR IGG ++ GL D G VKWAENANVGYMPQDPTE+FA + LTDWMG+WTQEGDDDQA Sbjct: 361 LRCIGGEEITGLAADQGRVKWAENANVGYMPQDPTEDFASDKNLTDWMGQWTQEGDDDQA 420 Query: 420 VRGILGRLLFSGDDVKKSVKVLSGGEKGRMMYGKLMLGRHNVLLMDEPTNHMDMESIESL 479 VR ILGRLLF GDDVKKSV+VLSGGEKGRM YGKLMLGRHNVLLMDEPTNHMDMESIESL Sbjct: 421 VRSILGRLLFGGDDVKKSVRVLSGGEKGRMTYGKLMLGRHNVLLMDEPTNHMDMESIESL 480 Query: 480 NIALEKYAGTLIFVSHDREFVSSLATRILEVKDGQVIDFQGSYEDYLASQGIE 532 NIALEKYAGTLIFVSHDREFVSSLATR+LE+KDG++IDFQG+YEDYL+SQGIE Sbjct: 481 NIALEKYAGTLIFVSHDREFVSSLATRVLELKDGEIIDFQGTYEDYLSSQGIE 533 >gi|134094544|ref|YP_001099619.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 656 Score = 301 bits (772), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 182/529 (34%), Positives = 280/529 (52%), Gaps = 27/529 (5%) Query: 12 GAKPLFENISVKFGDGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDVNERLGKLRQ 71 G KPL + + V G++ GLIGANG GKS+ +L G+L G + R+ + Q Sbjct: 3 GIKPLLDKVDVTLNPGDKIGLIGANGAGKSSLFGLLRGELHADLGTIDFPSKWRVAYVAQ 62 Query: 72 DQFAYEEMRVLDVVMMGHVEMWAAMSERDAIYANPDATDDDYMKAADLEAKFAEYDGYTA 131 + E +D + G V + E + + PD D+ + DL + A+ D YT Sbjct: 63 ETPPLER-SAIDYAIDGDVTLRRLEEELAFLESEPDTADNGTL-IGDLYSALADADAYTV 120 Query: 132 EARAGELLLGVGVPIEQHNGPMSNVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTI 191 +R +LLLG+G + Q P+++ + GW++R+ LAQAL D+LLLDEPTN+LD++ I Sbjct: 121 RSRGEQLLLGLGFTMAQMEQPVASFSGGWRMRLNLAQALMCPSDLLLLDEPTNHLDLDAI 180 Query: 192 RWLEEVLNERNSTMIIISHDRHFLNQVCTHMADMDYGTLKIYPGNYDDYMLASSQARAQQ 251 WLE+ L T+++ISHDR FL+ V + +D LK Y GNY + Q AQ Sbjct: 181 IWLEDWLKRYPGTLLVISHDRDFLDGVVNVIVHIDERKLKRYSGNYSGF---ERQRAAQM 237 Query: 252 LAANA---KAKEKVAELQDFVRRFSANKSKARQATSRAKQIDKIK------------VED 296 + A + K + A L+ F+ RF A SKARQA SR K + K++ E Sbjct: 238 ILAQSALEKQTRQRAHLESFINRFKAQASKARQAQSRMKALSKMEELAPLRAAAEFSFEF 297 Query: 297 IKPSSRVNPFVRFEGEKKLHRLAVETQSITKTYDRDIFKNFSIMVEAGEKIAIIGANGAG 356 +P++ NP + E +R+ E SIT ++ I + ++ G++I ++G NGAG Sbjct: 298 REPANAPNPLLVMENVDAGYRIENEDYSIT---EKKIVSGINFSLQIGQRIGLLGVNGAG 354 Query: 357 KTTLLRSIGGDVAGLHPDSGEVKWAENANVGYMPQDPTEEFAGGETLTDWMGKWTQEGDD 416 K+TL+++I A L P SG ++ + +GY Q E E+ W Sbjct: 355 KSTLIKTIA---AELQPLSGVSEFGKGLAIGYFAQHQVEMLRHEESPL-WHLAHIAPNVR 410 Query: 417 DQAVRGILGRLLFSGDDVKKSVKVLSGGEKGRMMYGKLMLGRHNVLLMDEPTNHMDMESI 476 +Q +R LG F+G V + SGGEK R+ ++ R N+LL+DEPTNH+D+E+ Sbjct: 411 EQELRNFLGSFNFNGAMVTSKIAPFSGGEKARLALALIVWQRPNLLLLDEPTNHLDLETR 470 Query: 477 ESLNIALEKYAGTLIFVSHDREFVSSLATRILEVKDGQVIDFQGSYEDY 525 E+L +AL ++ GTL+ VSHDR + + + V DG++ F G +DY Sbjct: 471 EALTMALAQFEGTLVVVSHDRHLLRATTDEFIIVADGKLQPFDGDLDDY 519 >gi|134095629|ref|YP_001100704.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 633 Score = 244 bits (624), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 167/540 (30%), Positives = 281/540 (52%), Gaps = 31/540 (5%) Query: 1 VLSTANITMQFGAKPLFENISVKFGDGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSL 60 V+S +N + FG PL + R GLIG NG GKS+ +KI+ G + G + Sbjct: 3 VISLSNAQLAFGHVPLLDKAEFSLEATERVGLIGRNGTGKSSLLKIIAGTSKLDDGLFVM 62 Query: 61 DVNERLGKLRQDQFAYEEMRVLDVVMMGHVEMWAAMSERDAIYANPDATDDDYM--KAAD 118 ++ + Q+ E V D V G +M ++E DA+ DDD + + D Sbjct: 63 QQGIKIAYVEQEPHFSPETSVYDAVASGMGDMQVLLTEYDALTGQFGGDDDDALMERMHD 122 Query: 119 LEAKFAEYDGYTAEARAGELLLGVGVPIEQHNGPMSNVAPGWKLRVLLAQALFSNPDILL 178 ++ K D + + L + + + G +S G + RV LA+AL S PD+LL Sbjct: 123 IQVKLDAADAWNLNHKVEATLDRLNLVKDSLMGTLSG---GMQKRVALARALVSAPDVLL 179 Query: 179 LDEPTNNLDINTIRWLEEVLNERNSTMIIISHDRHFLNQVCTHMADMDYGTLKIYPGNYD 238 LDEPTN+LD +I WLE +L + +++ I+HDR FL+ V T + ++D G L +PGN+ Sbjct: 180 LDEPTNHLDFTSILWLEGLLRDYKGSVLFITHDRSFLDNVATRIIELDRGRLLSFPGNFS 239 Query: 239 DYMLASSQARAQQLAANAKAKEKVAELQDFVRRFSANKSKARQATSRAKQIDKIKVEDIK 298 Y + ++ + NAK + +A+ + ++R+ +++ + R ++++ ++ + Sbjct: 240 AYQVRKAEQLEIEEVENAKFDKFLAQEEVWIRK--GVQARRTRDEGRVRRLEALR---LS 294 Query: 299 PSSRVNPFVRFEGEKKLH--------RLAVETQSITKTY-DRDIFKNFSIMVEAGEKIAI 349 S+R + +G+ KL ++ E ++I K Y D+ I K+FS + G+K+ + Sbjct: 295 RSARRDQ----QGQVKLDVSSGDRSGKIVAEMENINKVYGDKVIVKDFSATILRGDKVGL 350 Query: 350 IGANGAGKTTLLRSIGGDVAGLHPDSGEVKWAENANVGYMPQ---DPTEEFAGGETLTDW 406 IG NGAGKTTLL+ I G+ PDSG VK + Y Q EE + +T+ Sbjct: 351 IGLNGAGKTTLLKMILGEE---EPDSGTVKQGTKLQIAYFDQMRAQLNEEMSLADTIAPG 407 Query: 407 MGKWTQEGDDDQAVRGILGRLLFSGDDVKKSVKVLSGGEKGRMMYGKLMLGRHNVLLMDE 466 W + + V L LF+ + + VK LSGGE+ R++ +L NVL++DE Sbjct: 408 -SDWVEINGQRKHVMTYLNDFLFAPERARSPVKSLSGGERNRLLLARLFAKPANVLVLDE 466 Query: 467 PTNHMDMESIESLNIALEKYAGTLIFVSHDREFVSSLATRILEVK-DGQVIDFQGSYEDY 525 PTN +D++++E L LE Y GT+ VSHDR F+ ++ T+++ + +G ++ G Y D+ Sbjct: 467 PTNDLDIDTLELLEELLEDYEGTVFLVSHDRTFLDNVVTQVIVAEGNGLWREYIGGYSDW 526 >gi|134096461|ref|YP_001101536.1| putative ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 555 Score = 233 bits (593), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 170/527 (32%), Positives = 272/527 (51%), Gaps = 22/527 (4%) Query: 14 KPLFENISVKFGDGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDVNERLGKLRQDQ 73 + + ++IS+ F G + G++G NG GKST +KI+ G G N +G L Q+ Sbjct: 19 RQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDTDIIGEARPAPNLNIGYLPQEP 78 Query: 74 FAYEEMRVLDVVMMGHVEMWAAMSERDAIYA---NPDATDDDYMKAAD--LEAKFAEYDG 128 E V V G E++ A + +A+YA PDA D D + A LEA + G Sbjct: 79 QLDPEQTVRQAVEGGLGEVFEAKALLEAVYAAYAEPDA-DFDALAAEQGRLEAIISTSAG 137 Query: 129 YTAEARAGELLLGVGVPIEQHNGPMSNVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDI 188 E + + +P + + ++ G K RV L + L S PD+LLLDEPTN+LD Sbjct: 138 DNPEQQLEMAADALRLP--PWDAKIGVLSGGEKRRVALCRLLLSKPDMLLLDEPTNHLDA 195 Query: 189 NTIRWLEEVLNERNSTMIIISHDRHFLNQVCTHMADMDYGTLKIYPGNYDDYMLASSQAR 248 ++ WLE+ L T++ I+HDR+FL+ + ++D G+ + GNY ++ Sbjct: 196 ESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGSGIPWKGNYSSWLEQKGDRL 255 Query: 249 AQQLAANAKAKEKVAELQDFVRRFSANKSKARQATSRAK--QIDKIKVEDIKPSSRVNPF 306 Q+ A + ++ +A+ ++VR+ K RQA S+A+ + +++ + + + Sbjct: 256 KQEEATESSRQKTIAKELEWVRQ----NPKGRQAKSKARLARFNELSEHEYQKRNETQEI 311 Query: 307 VRFEGEKKLHRLAVETQSITKTY-DRDIFKNFSIMVEAGEKIAIIGANGAGKTTLLRSIG 365 E+ L +E ++++K + DR + N + + AG + IIG NGAGK+TL + I Sbjct: 312 FIPVAER-LGNEVIEFKNVSKAFGDRLLIDNLNFRIPAGAIVGIIGPNGAGKSTLFKMIT 370 Query: 366 GDVAGLHPDSGEVKWAENANVGYMPQDPTEEFAGGETLTDWMG--KWTQEGDDDQAVRGI 423 G PDSGEV A V + Q G D G G + R Sbjct: 371 GKE---QPDSGEVVIGTTARVSIVDQSRDSLNDGKTVFEDVTGGADILTVGRFEMPSRAY 427 Query: 424 LGRLLFSGDDVKKSVKVLSGGEKGRMMYGKLMLGRHNVLLMDEPTNHMDMESIESLNIAL 483 LGR F G D +K V LSGGE+GR+ K +L NVLL+DEP+N +D+E++ +L AL Sbjct: 428 LGRFNFKGGDQQKVVGNLSGGERGRLHLAKTLLMGGNVLLLDEPSNDLDVETLRALEDAL 487 Query: 484 EKYAGTLIFVSHDREFVSSLATRILEVK-DGQVIDFQGSYEDYLASQ 529 ++AG+++ +SHDR F+ +AT IL + + QV F G+Y++Y A + Sbjct: 488 LEFAGSVMVISHDRWFLDRIATHILAFEGNSQVSFFDGNYQEYEADK 534 Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 124/238 (52%), Gaps = 42/238 (17%) Query: 331 RDIFKNFSIMVEAGEKIAIIGANGAGKTTLLRSIGGDVAGLHPDS-GEVKWAENANVGYM 389 R I K+ S+ G KI ++G NG+GK+TLL+ + AG+ D GE + A N N+GY+ Sbjct: 19 RQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIM----AGIDTDIIGEARPAPNLNIGYL 74 Query: 390 PQDPT----------------EEFAGGETLTDWMGKWTQEGDDDQAVRGILGRL-----L 428 PQ+P E F L + + D A+ GRL Sbjct: 75 PQEPQLDPEQTVRQAVEGGLGEVFEAKALLEAVYAAYAEPDADFDALAAEQGRLEAIIST 134 Query: 429 FSGDDVKKSVK----------------VLSGGEKGRMMYGKLMLGRHNVLLMDEPTNHMD 472 +GD+ ++ ++ VLSGGEK R+ +L+L + ++LL+DEPTNH+D Sbjct: 135 SAGDNPEQQLEMAADALRLPPWDAKIGVLSGGEKRRVALCRLLLSKPDMLLLDEPTNHLD 194 Query: 473 MESIESLNIALEKYAGTLIFVSHDREFVSSLATRILEVKDGQVIDFQGSYEDYLASQG 530 ES++ L L+++ GT++ ++HDR F+ + A ILE+ G I ++G+Y +L +G Sbjct: 195 AESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGSGIPWKGNYSSWLEQKG 252 >gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 534 Score = 105 bits (261), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 119/549 (21%), Positives = 227/549 (41%), Gaps = 86/549 (15%) Query: 1 VLSTANITMQFGAKPLFENISVKFGDGNRYGLIGANGCGKS-TFMKILGGDLEPS-AGNV 58 +L N+ + F + ++S G ++ L+G +G GK+ T + IL + + + AG + Sbjct: 3 LLEIQNLQVSFDTSKVVNDVSFSIAAGEKFALVGESGSGKTVTALSILRLNQDAAYAGRI 62 Query: 59 SLDVNERLGKLRQDQFAYEEMRVLDVVMMGHVEMWAAMSERDAIYANPDATDDDYMKAAD 118 + + L++ + A +R DV M+ M A + ++ + + M Sbjct: 63 LFEGQD---ILQRSEAAMRAVRGKDVAMIFQEPMTAL----NPLFTIGNQIAEGLMLHEG 115 Query: 119 LEAKFAEYDGYTAEARAGELLLGVGVPIEQHNG---PMSNVAPGWKLRVLLAQALFSNPD 175 L A+ A RA ELL G+P Q P ++ G + R ++A AL P Sbjct: 116 LSARIAAL-------RAIELLDKTGIPEPQRRALSYP-HQLSGGQRQRAMIAMALACKPK 167 Query: 176 ILLLDEPTNNLDINTIRWLEEVLN----ERNSTMIIISHDRHFLNQVCTHMADMDYGTLK 231 +L+ DEPT LD+ + E+LN E N +++I+HD + + + M+ G L Sbjct: 168 LLIADEPTTALDVTIQVQIVELLNQLQREENMAVLMITHDLNLVRHFADRVGVMEKGCLV 227 Query: 232 IYPGNYDDYMLASSQARAQQLAANAKAKEKVAELQDFVRRFSANKSKARQATSRAKQIDK 291 + + A + + R+ A++ + T + Sbjct: 228 EVAATRELF---------------------TAPRETYTRKLLASQPQQLVNTLNESAVPL 266 Query: 292 IKVEDIKPSSRVNPFVRFEGEKKLHRLAVETQSITKTYDRDIFKNFSIMVEAGEKIAIIG 351 + E ++ + + Q KT + S+ V GE + I+G Sbjct: 267 LSAEHVRCTFDIK------------------QGWFKTTPFVAVDDVSVQVRPGETLGIVG 308 Query: 352 ANGAGKTTL----LRSIGGDVAG--------LHPDSGEVKWAENANVGYMPQDPTEEFAG 399 +G+GKTTL LR V+G L+ + A + + QDP + Sbjct: 309 ESGSGKTTLGLALLRLSSARVSGTIAFDGKPLNAMQSDALRPLRARMQIVFQDPFASLSP 368 Query: 400 GETLTDWMGKWTQEGDDDQAVRGI-------LGRLLFSGDDVKKSVKVLSGGEKGRMMYG 452 T+ +G+ GI L + D + + SGG++ R+ Sbjct: 369 RRTIEQIVGEGLALHQPQLGAAGIRKAVADALLEVGLPPDIMARYPHEFSGGQRQRIAIA 428 Query: 453 KLMLGRHNVLLMDEPTNHMDMESIESLNIAL----EKYAGTLIFVSHDREFVSSLATRIL 508 ++++ + +++L+DEPT+ +D+ + + L +KY IF+SHD + ++A R++ Sbjct: 429 RVLVLKPDLVLLDEPTSSLDVSVQQQVLQLLLELQKKYELAYIFISHDLAVIRAMAHRVM 488 Query: 509 EVKDGQVID 517 +KDG+V++ Sbjct: 489 VMKDGKVVE 497 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 995,446 Number of extensions: 41518 Number of successful extensions: 410 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 392 Number of HSP's successfully gapped: 19 Length of query: 532 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 446 Effective length of database: 716,977 Effective search space: 319771742 Effective search space used: 319771742 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)