BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2065.p
         (334 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094608|ref|YP_001099683.1| L,D-carboxypeptidase A [Hermini...   323   8e-90

>gi|134094608|ref|YP_001099683.1| L,D-carboxypeptidase A
           [Herminiimonas arsenicoxydans]
          Length = 316

 Score =  323 bits (828), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 169/313 (53%), Positives = 209/313 (66%), Gaps = 18/313 (5%)

Query: 19  VAIVAPCGHAGLDPAGVQRGVALLESLGCRVRNFYDHAQRYQRFGATDEQRAAQLMQAAA 78
           VAIV+P G+A + P  V+RG+A L++ GCRVRNF D A R+QRFGA D+ R AQL  AA 
Sbjct: 19  VAIVSPSGYASI-PGAVERGIATLQAQGCRVRNFTDSASRFQRFGAGDDARIAQLYAAAQ 77

Query: 79  DPEIDVILGLRGSYGMSRILPALDIAALARSGKLLVGYSDFTALQCCMLAQTGYAGFQGP 138
           DP++D++L LRG YG++R+LP LD + LA SGKL VG+SDFTALQ  +LAQTG   F GP
Sbjct: 78  DPDVDIVLALRGGYGLTRLLPELDFSQLAASGKLFVGHSDFTALQMGLLAQTGAMSFSGP 137

Query: 139 MLSGDFGAENPDWQALATLWRTLTSPQVVVRNYQGQAGADRAPNGDRRTDPLSPVVHCTG 198
           ML  DF  +      L   W+ LT P   +        A    N         P +   G
Sbjct: 138 MLCDDFVRDELSAYTLNNFWQCLTQPAHTIT-------AQTENN---------PQLQVKG 181

Query: 199 KLWGGNLAMMAHMVGHPQFPPIDGGILYLEDVNEHPFRVERMILQLEQAGVLARQKAILL 258
            LWGGNLAM+ H+VG P  P IDGGIL +EDVNEHP+RVERM+LQL  AGVL  Q+A+LL
Sbjct: 182 TLWGGNLAMLTHLVGSPWLPKIDGGILCVEDVNEHPYRVERMMLQLLHAGVLDGQQAVLL 241

Query: 259 GDFSAYRLAEIDNGYDFTEMLAYLRRRIATPIVTGLPFGHVRDMVTLPLGAHAVLDAQGA 318
           GDFS YRL++ DNGYDF +MLAYLR  +  P++TGLPFGH RD  TL LG+ A L A   
Sbjct: 242 GDFSGYRLSDYDNGYDFAQMLAYLRAHLPVPVLTGLPFGHGRDKATLVLGSRAELVADSV 301

Query: 319 EGFTLTLSDYPTL 331
             F+LT+S Y +L
Sbjct: 302 S-FSLTMSGYRSL 313


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 719,532
Number of extensions: 31947
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 252
Effective length of database: 730,157
Effective search space: 183999564
Effective search space used: 183999564
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)