BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2064.p
         (185 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094605|ref|YP_001099680.1| tRNA-specific adenosine deamina...   263   3e-72
gi|134094122|ref|YP_001099197.1| putative guanine deaminase [Her...    69   2e-13
gi|134094405|ref|YP_001099480.1| putative guanine deaminase [Her...    67   6e-13
gi|134095549|ref|YP_001100624.1| bifunctional diaminohydroxyphos...    54   6e-09

>gi|134094605|ref|YP_001099680.1| tRNA-specific adenosine deaminase
           [Herminiimonas arsenicoxydans]
          Length = 170

 Score =  263 bits (673), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 125/160 (78%), Positives = 141/160 (88%), Gaps = 1/160 (0%)

Query: 8   QAITEADLRHMRAALDQANNAWALGEVPVGAVVVKDGVVIASGFNQPIGKHDPTAHAEIM 67
           Q +T+ ++  MR ALDQA+NAWALGEVPVGAVVVKDG VIA+GFNQPIG HDPTAHAEIM
Sbjct: 6   QDVTQDEIW-MRQALDQAHNAWALGEVPVGAVVVKDGQVIATGFNQPIGTHDPTAHAEIM 64

Query: 68  ALRRAAEKLGNYRLPGCELYVTLEPCVMCSGAMMHARLARVVYGAADPKTGACGSVVNLF 127
           ALR AA  LGNYRLPGCELYVTLEPCVMCSGAMMHARLARVV+GA+DPKTGACGS+VNLF
Sbjct: 65  ALRAAATILGNYRLPGCELYVTLEPCVMCSGAMMHARLARVVFGASDPKTGACGSIVNLF 124

Query: 128 EQERLNHHTALLGGVMAEECGQLLKEFFAMRREQVKQQRL 167
           EQ +LNHHT L GG+MA+ECG LLK+FFA RR+  +  +L
Sbjct: 125 EQNQLNHHTQLTGGLMAQECGALLKDFFAERRKAAQAAKL 164


>gi|134094122|ref|YP_001099197.1| putative guanine deaminase
           [Herminiimonas arsenicoxydans]
          Length = 153

 Score = 68.9 bits (167), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 48/86 (55%)

Query: 25  ANNAWALGEVPVGAVVVKDGVVIASGFNQPIGKHDPTAHAEIMALRRAAEKLGNYRLPGC 84
           A N    G  P GAV+  DG +IA+G N  +  HDPT HAE+  LR A+++LG   L G 
Sbjct: 15  AKNNHQQGGRPFGAVLTMDGEIIATGVNNIVHSHDPTTHAEMETLRAASQRLGRPNLKGS 74

Query: 85  ELYVTLEPCVMCSGAMMHARLARVVY 110
            +Y +  PC MC  A++   +  V Y
Sbjct: 75  VVYASGHPCPMCLAALVLTGVDAVYY 100


>gi|134094405|ref|YP_001099480.1| putative guanine deaminase
           [Herminiimonas arsenicoxydans]
          Length = 153

 Score = 67.0 bits (162), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 32  GEVPVGAVVVKDGVVIASGFNQPIGKHDPTAHAEIMALRRAAEKLGNYRLPGCELYVTLE 91
           G  P GAV+  D  VIA G N  +  HDPT HAE+ A+R A+++LG   L G  +Y +  
Sbjct: 23  GGRPFGAVLAIDNEVIAVGVNNIVHSHDPTTHAEMEAIRSASQRLGRPNLKGSVIYASGH 82

Query: 92  PCVMCSGAMMHARLARVVYGAADPKTGA 119
           PC MC  AM+   +  V Y A D K  A
Sbjct: 83  PCPMCLAAMVLTGVDAVYY-AFDNKDAA 109


>gi|134095549|ref|YP_001100624.1| bifunctional
          diaminohydroxyphosphoribosylaminopyrimidine deaminase
          (N-terminal)/5-amino-6-(5-phosphoribosylamino) uracil
          reductase [Herminiimonas arsenicoxydans]
          Length = 363

 Score = 53.5 bits (127), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 8/83 (9%)

Query: 13 ADLRHMRAALD-QANNAWALGEVP-VGAVVVKDGVVIASGFNQPIGKHDPTAHAEIMALR 70
          +D++ +R AL+  A   +     P VG V+VK+  VI SG+ QP G     AHAE+ AL 
Sbjct: 5  SDVQGIRLALELAARGMFTTAPNPRVGCVIVKENQVIGSGYTQPAGH----AHAEVQALN 60

Query: 71 RAAEKLGNYRLPGCELYVTLEPC 93
           AA K   Y + G  +YVTLEPC
Sbjct: 61 DAANK--GYDVAGSTVYVTLEPC 81


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 315,079
Number of extensions: 10201
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 4
Length of query: 185
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 109
Effective length of database: 749,927
Effective search space: 81742043
Effective search space used: 81742043
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)