BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2063.p
         (148 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094604|ref|YP_001099679.1| putative 6-pyruvoyl tetrahydrob...   261   8e-72

>gi|134094604|ref|YP_001099679.1| putative 6-pyruvoyl
           tetrahydrobiopterin synthase [Herminiimonas
           arsenicoxydans]
          Length = 149

 Score =  261 bits (668), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 124/148 (83%), Positives = 133/148 (89%)

Query: 1   MLTITRKLEFDAGHRIPDHKSQCRNLHGHRYTLEITLTGAVIDIEGNSDNGMIMDFSDIK 60
           MLTITRKLEFDAGHRIPDHKSQCRNLHGHRYTLEITL G VID EG+SDNGMIMDFSDIK
Sbjct: 1   MLTITRKLEFDAGHRIPDHKSQCRNLHGHRYTLEITLVGNVIDEEGSSDNGMIMDFSDIK 60

Query: 61  ALAKEHLVDVWDHAFLVYEKDTPVRDFLASLPGHKTVIIGSIPTVENLAREAFAILKAAY 120
           +LAK+HLVDVWDH+FLVYEKD  VR+FL S+P HKTV+I  IPTVENLA+ AF IL AAY
Sbjct: 61  SLAKQHLVDVWDHSFLVYEKDVKVREFLESIPDHKTVVIDRIPTVENLAQTAFNILNAAY 120

Query: 121 KDRYGTGLHLQKLVLHETPNCWAEITAD 148
           KD YGTGL L KLVLHETPNCWAEITA+
Sbjct: 121 KDHYGTGLRLHKLVLHETPNCWAEITAE 148


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 293,783
Number of extensions: 10957
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 1,000,347
Length adjustment: 74
Effective length of query: 74
Effective length of database: 756,517
Effective search space: 55982258
Effective search space used: 55982258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)