BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2062.p
         (229 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094603|ref|YP_001099678.1| hypothetical protein HEAR1379 [...   362   e-102

>gi|134094603|ref|YP_001099678.1| hypothetical protein HEAR1379
           [Herminiimonas arsenicoxydans]
          Length = 248

 Score =  362 bits (929), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 170/214 (79%), Positives = 185/214 (86%)

Query: 16  SLIVTYSIKEIFYTLQGEGAHAGRPAVFCRFSGCNLWTGREEDRARAICQFCDTDFVGTD 75
           ++I+TYSIKEIFYTLQGEGAHAGRPAVFCRFSGCNLWTGRE DRA A+CQFCDTDFVGTD
Sbjct: 35  AIILTYSIKEIFYTLQGEGAHAGRPAVFCRFSGCNLWTGRESDRATAVCQFCDTDFVGTD 94

Query: 76  GENGGKFKSAEALAAKIDSLWPATYAPSKYVVFTGGEPLLQLDAALIAAMHAVGFEIAIE 135
           GE GGKF  A  LA  I++LWPA+YA SKYVVFTGGEPLLQLD  LI AMHAVGFEIAIE
Sbjct: 95  GEGGGKFADAVKLANTINALWPASYAASKYVVFTGGEPLLQLDTELINAMHAVGFEIAIE 154

Query: 136 TNGTIAVPEGVDWICVSPKMGAELKVTRGSELKVVVPQAGQPLAHYETLDFQHFLLQPMD 195
           TNGT+ VP GVDWICVSPKMG++L V +GSELKVV+PQ  Q LA YE LDFQHF +QPMD
Sbjct: 155 TNGTLPVPAGVDWICVSPKMGSQLVVRKGSELKVVIPQLAQSLAAYEDLDFQHFFVQPMD 214

Query: 196 GPQAAANTRLAIEMVKHNPKWKLSIQTHKLLNIP 229
           GP A  NTRLAIE+ K NPKWKLS+QTHKLL IP
Sbjct: 215 GPLAEQNTRLAIEICKKNPKWKLSLQTHKLLQIP 248


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 466,707
Number of extensions: 19966
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 150
Effective length of database: 740,042
Effective search space: 111006300
Effective search space used: 111006300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)