BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2059.p
         (530 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094586|ref|YP_001099661.1| GMP synthase [Herminiimonas ars...   942   0.0  

>gi|134094586|ref|YP_001099661.1| GMP synthase [Herminiimonas
           arsenicoxydans]
          Length = 539

 Score =  942 bits (2436), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/539 (85%), Positives = 493/539 (91%), Gaps = 15/539 (2%)

Query: 6   HSKILILDFGSQVTQLIARRVREAGVFSEVFPHDVTDEFVRNYGAAGVILSGGPNSVTEG 65
           HSKILILDFGSQVTQLIARRVR++GVFSEV+P+DV+DEFVRNYGAAGVILSGGPNSV EG
Sbjct: 2   HSKILILDFGSQVTQLIARRVRDSGVFSEVYPYDVSDEFVRNYGAAGVILSGGPNSVIEG 61

Query: 66  D-TPRAPQAVFELGVPVLGICYGMQTMAEQLGGKVENGHLREFGYAEVRAHGHTKLLDNI 124
           D +PR PQAVFELGVPVLGICYGMQ MAEQLGGKVENG +REFGYAEVRAHGHT LL +I
Sbjct: 62  DESPRVPQAVFELGVPVLGICYGMQAMAEQLGGKVENGTVREFGYAEVRAHGHTALLKDI 121

Query: 125 SDFTNAQGHGMLKVWMSHGDKVNDMPAGFKLMASTGNCPIAGMADEERRFYGVQFHPEVT 184
           SDFT  +GHGMLKVWMSHGDKVN+MP GFKLMAST NCPIAGMADE R  Y  QFHPEVT
Sbjct: 122 SDFTTPEGHGMLKVWMSHGDKVNEMPPGFKLMASTPNCPIAGMADEARHMYAFQFHPEVT 181

Query: 185 HTVQGKAMLGRFVHEICGCQSDWNMPDYIAEAVEMIRQQVGSDEVILGLSGGVDSSVAAA 244
           HT+QGKA++ RFVH+ICGC+SDWNMPDYIAEAVE IRQQVG+DEVILGLSGGVDSSVAAA
Sbjct: 182 HTLQGKAIIARFVHDICGCKSDWNMPDYIAEAVEKIRQQVGNDEVILGLSGGVDSSVAAA 241

Query: 245 LIHRAIGDQLTCVFVDHGLLRLDEGKMVMEMFAKNLGVKVIHVDATEQFMGHLAGVTDPE 304
           LIHRAIGDQLTCVFVDHGLLRLDEGKMVMEMFA +LGV VI +DA +QFMGHLAGVTDPE
Sbjct: 242 LIHRAIGDQLTCVFVDHGLLRLDEGKMVMEMFADHLGVNVIRIDAVDQFMGHLAGVTDPE 301

Query: 305 AKRKIIGREFVEVFQAESAKLTSAKWLAQGTIYPDVIESAGKGKKTAHTIKSHHNVGGLP 364
           AKRKIIGREFVEVFQ E+ K  +AKWLAQGTIYPDVIESAGKGKK  HTIKSHHNVGGLP
Sbjct: 302 AKRKIIGREFVEVFQVEAGKRKNAKWLAQGTIYPDVIESAGKGKK-GHTIKSHHNVGGLP 360

Query: 365 ETLNLKLLEPLRELFKDEVRELGVALGLPPEMVYRHPFPGPGLGVRILGEVKKEYADLLR 424
           ETLNL+LLEPLRELFKDEVR+LGVALGLP +MVYRHPFPGPGLGVRILGEVKK++ADLLR
Sbjct: 361 ETLNLQLLEPLRELFKDEVRQLGVALGLPHDMVYRHPFPGPGLGVRILGEVKKDFADLLR 420

Query: 425 RADAIFIEELRNT----------KDEDG---QTWYEKTSQAFAVFLPVKSVGVMGDGRTY 471
           RADAIFIEELRNT            ++G   + WY+ TSQAFAVFLPVKSVGVMGDGRTY
Sbjct: 421 RADAIFIEELRNTPYVLAAGASESTDNGIPHRNWYDATSQAFAVFLPVKSVGVMGDGRTY 480

Query: 472 EYVVALRAVQTQDFMTAHWAHLPHELLGRVSNRIINEVRGLNRVVYDISGKPPATIEWE 530
           EYVVALRAVQTQDFMTAHWAHLP+ELLG+VSNRIINEVRG+NRVVYDISGKPPATIEWE
Sbjct: 481 EYVVALRAVQTQDFMTAHWAHLPYELLGKVSNRIINEVRGINRVVYDISGKPPATIEWE 539


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,071,004
Number of extensions: 46278
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 444
Effective length of database: 716,977
Effective search space: 318337788
Effective search space used: 318337788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)