BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2056.p
         (143 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094581|ref|YP_001099656.1| hypothetical protein HEAR1356 [...   233   2e-63

>gi|134094581|ref|YP_001099656.1| hypothetical protein HEAR1356
           [Herminiimonas arsenicoxydans]
          Length = 140

 Score =  233 bits (595), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 101/140 (72%), Positives = 123/140 (87%)

Query: 4   VHKTVLINYSAEQMFNLVDKVEDYPEFLPWCGGVEVSERSDESLTAKIKISYHGLKQSFS 63
           +HKTVL+ YSAEQMF LVD+VEDYP+FLPWCGG++V +R +  L A I I+YHG++QSF+
Sbjct: 1   MHKTVLLGYSAEQMFTLVDRVEDYPQFLPWCGGIDVKQREEGKLVASIMINYHGIRQSFT 60

Query: 64  TQNTNVRPTSMTMRLVEGPFKHFEGRWTFKPLREDACKIEFDMQYEFSSRILESVIGPVF 123
           T+NT VRP SMTMRL+EGPFK   G WTFKPLREDACKIEFD+QYEFS+R++ES+IGPVF
Sbjct: 61  TENTTVRPVSMTMRLLEGPFKELHGTWTFKPLREDACKIEFDLQYEFSNRLIESIIGPVF 120

Query: 124 SMIANSFVDSFCKRAEQIYG 143
           +MIA SFVDSF KRAE++YG
Sbjct: 121 NMIATSFVDSFSKRAEEVYG 140


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 233,970
Number of extensions: 7894
Number of successful extensions: 18
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 1,000,347
Length adjustment: 73
Effective length of query: 70
Effective length of database: 759,812
Effective search space: 53186840
Effective search space used: 53186840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)