BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2055.p
         (149 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094580|ref|YP_001099655.1| SsrA-binding protein [Herminiim...   246   3e-67
gi|134094683|ref|YP_001099758.1| SsrA-binding protein [Herminiim...   230   3e-62

>gi|134094580|ref|YP_001099655.1| SsrA-binding protein
           [Herminiimonas arsenicoxydans]
          Length = 149

 Score =  246 bits (628), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 116/149 (77%), Positives = 130/149 (87%)

Query: 1   MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60
           MSI+DN+KAF DYFIEERFEAG+VLQGWEVK+IRAGR QLKEAYVIVRN E++LFG HIS
Sbjct: 1   MSIVDNRKAFHDYFIEERFEAGIVLQGWEVKAIRAGRSQLKEAYVIVRNDEIFLFGAHIS 60

Query: 61  ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRVKCDIGLAK 120
            L S STHV P+  RTRKLLL A EI KL  KVER+GYTLVPLNLHY KG +KC+IGLAK
Sbjct: 61  PLASASTHVTPDPVRTRKLLLKADEIKKLSIKVERAGYTLVPLNLHYQKGYIKCEIGLAK 120

Query: 121 GKKQHDKRETEKQRDSQREIQTAMKQHRR 149
           GKKQHDKR++EKQRD+QREIQ  MKQ+RR
Sbjct: 121 GKKQHDKRDSEKQRDTQREIQAVMKQNRR 149


>gi|134094683|ref|YP_001099758.1| SsrA-binding protein
           [Herminiimonas arsenicoxydans]
          Length = 149

 Score =  230 bits (586), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 105/149 (70%), Positives = 129/149 (86%)

Query: 1   MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60
           M+I+DN+KAF DYFIE+R+EAG+VLQGWEVK+IRAGRVQL+EAYVI R+ E+YLFG H+S
Sbjct: 1   MTIVDNRKAFHDYFIEDRYEAGIVLQGWEVKAIRAGRVQLREAYVIARDNEIYLFGAHVS 60

Query: 61  ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRVKCDIGLAK 120
           AL STS+  HPE  RTRKLLL+AA+I KL+ KV++SG+T+VP+NLH+  GRVKCDI LAK
Sbjct: 61  ALNSTSSFDHPEAIRTRKLLLHAAQIKKLVSKVDQSGFTMVPVNLHWVGGRVKCDIALAK 120

Query: 121 GKKQHDKRETEKQRDSQREIQTAMKQHRR 149
           GKK++DKR TEK+RD QRE Q  MK HRR
Sbjct: 121 GKKEYDKRNTEKERDWQREQQKIMKIHRR 149


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 256,087
Number of extensions: 8850
Number of successful extensions: 23
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 2
Length of query: 149
Length of database: 1,000,347
Length adjustment: 74
Effective length of query: 75
Effective length of database: 756,517
Effective search space: 56738775
Effective search space used: 56738775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)