BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2053.p (229 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096137|ref|YP_001101212.1| response regulator [Herminiimon... 152 1e-38 gi|134095106|ref|YP_001100181.1| osmolarity response regulator [... 151 2e-38 gi|134094768|ref|YP_001099843.1| response regulator in two-compo... 117 5e-28 gi|134093799|ref|YP_001098874.1| response regulator in two-compo... 116 7e-28 gi|134093341|ref|YP_001098416.1| putative two-component system r... 112 2e-26 >gi|134096137|ref|YP_001101212.1| response regulator [Herminiimonas arsenicoxydans] Length = 233 Score = 152 bits (385), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 94/231 (40%), Positives = 132/231 (57%), Gaps = 10/231 (4%) Query: 6 LIDDDVELVEMLKEYLEQEKFEVN---VAYDGEAGAAEALSGQ-YAIAVLDVMMPRLNGV 61 +I+DD L M+ YL Q F+V A +G A +G+ +AI +LD+M+P +G+ Sbjct: 1 MIEDDQRLAAMVATYLGQNGFDVQHSATAAEGLQQLQHASAGESFAIVLLDLMLPDADGL 60 Query: 62 DTLRRIRAK----SNMPVVMLTAKGDDTDRIIGLELGADDYVPKPCTPREIAARIRAILR 117 D R+IRA + +P+VMLTAKGD DR++GLELGADDY+PKP PRE+ AR+RA+LR Sbjct: 61 DVCRQIRAFPAPLNTLPIVMLTAKGDPMDRVVGLELGADDYIPKPFEPRELLARLRAVLR 120 Query: 118 RASAETSEQAPYSPLAVGALSMWPEQRRATWSGRPLELTSSEFNLLEVLARNAGKPVSKQ 177 R T+ L G L + + R + +TS +FNLL +A AG+ +S++ Sbjct: 121 R--QHTTPATDGHVLRFGRLEIDLDARMIRLDDQDKPVTSYQFNLLAAMAERAGRVLSRE 178 Query: 178 ILSEQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIK 228 L + G PL FDR+IDVH+ +R I I TV GY F K Sbjct: 179 QLMDAVKGEPLEAFDRSIDVHIGRLRAAIEDDPKQPKRIITVRGAGYVFAK 229 >gi|134095106|ref|YP_001100181.1| osmolarity response regulator [Herminiimonas arsenicoxydans] Length = 255 Score = 151 bits (382), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 87/214 (40%), Positives = 126/214 (58%), Gaps = 4/214 (1%) Query: 20 YLEQEKFEVNVAYDGEAGAAEALSGQYAIAVLDVMMPRLNGVDTLRRIR-AKSNMPVVML 78 YL ++ F V A +A L +Y + VLD+M+P +G+ RR+R A P++ML Sbjct: 38 YLSEQGFNVVTAESAQAMNKLWLRERYDLLVLDLMLPGEDGLSICRRLRGAGDKTPIIML 97 Query: 79 TAKGDDTDRIIGLELGADDYVPKPCTPREIAARIRAILRRASAETSEQAPY---SPLAVG 135 TAKG+D DRI+GLE+GADDY+ KP PRE+ ARI A+LRR + + AP G Sbjct: 98 TAKGEDVDRIVGLEMGADDYIAKPFNPRELVARISAVLRRIGPDEAPGAPSETPQSFTFG 157 Query: 136 ALSMWPEQRRATWSGRPLELTSSEFNLLEVLARNAGKPVSKQILSEQGLGRPLARFDRNI 195 ++ R + + LT+ EF++L+V AR+A +P+S++ L E GR FDR++ Sbjct: 158 EFTLDLGTRTLKKNDETVPLTTGEFSVLKVFARHARQPLSREKLMELARGREYEVFDRSL 217 Query: 196 DVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIKE 229 DV +S +R+ I S IQTV+ LGY FI E Sbjct: 218 DVQISRLRKLIEPDPSTPLYIQTVWGLGYVFIPE 251 >gi|134094768|ref|YP_001099843.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 230 Score = 117 bits (293), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 126/227 (55%), Gaps = 14/227 (6%) Query: 3 KVLLIDDDVELVEMLKEYLEQEKFEVNVAYDGEAGAAEALSGQYAIAVLDVMMPRLNGVD 62 K+L+++D+V+ E L++ L + F V+ A +G G A++G Y + +LDVM+P ++G Sbjct: 2 KLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGNYDLIILDVMLPDIDGWK 61 Query: 63 TLRRIR-AKSNMPVVMLTAKGDDTDRIIGLELGADDYVPKPCTPREIAARIRAILRRASA 121 L+ +R A +N+P + LTA+ DR+ GLELGADDYV KP E+ AR+R +LRR Sbjct: 62 ILQALRNAGNNVPALFLTARDGVADRVKGLELGADDYVVKPFAFSELLARVRTLLRRGIP 121 Query: 122 ETSEQAPYSPLA----VGALSMWPEQRRATWSGRPLELTSSEFNLLEVLARNAGKPVSKQ 177 SPL V L + +R AT +G+ L LT+ EF LLE L R+ G+ + + Sbjct: 122 --------SPLVDRMQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRS 173 Query: 178 ILSEQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGY 224 +++ Q IDV + +R K+ + I T+ +GY Sbjct: 174 LIASQIWDINFNSDTNVIDVAIRRLRSKMDD-DYEPKLISTIRGVGY 219 >gi|134093799|ref|YP_001098874.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 207 Score = 116 bits (291), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 76/202 (37%), Positives = 115/202 (56%), Gaps = 6/202 (2%) Query: 26 FEVNVAYDGEAGAAEALSGQYAIAVLDVMMPRLNGVDTLRRIR-AKSNMPVVMLTAKGDD 84 F V++A +G G A++ QY + +LDVM+P ++G ++ +R A MPV+ LTA+G Sbjct: 5 FMVDLARNGLDGHHMAMNEQYDLVLLDVMLPDVDGWRIVKSLREAGKQMPVLFLTARGGV 64 Query: 85 TDRIIGLELGADDYVPKPCTPREIAARIRAILRRASAETSEQAPYSPLAVGALSMWPEQR 144 DR+ GLELGADDY+ KP E+ AR+R +LRR SA + + L V L + +R Sbjct: 65 DDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGSAPSQSER----LEVADLILDLPRR 120 Query: 145 RATWSGRPLELTSSEFNLLEVLARNAGKPVSKQILSEQGLGRPLARFDRNIDVHLSSIRQ 204 +AT G+ + LT+ EF+LLE+LAR G+ + + +++ Q IDV + +R Sbjct: 121 KATRMGQKIVLTNKEFSLLELLARRQGEVLPRSLIASQVWDMNFDSDSNAIDVAIRRLRA 180 Query: 205 KIAALGSDKSCIQTVYRLGYQF 226 KI K I TV +GY Sbjct: 181 KIDDPFEPK-LIHTVRGMGYTL 201 >gi|134093341|ref|YP_001098416.1| putative two-component system regulatory protein [Herminiimonas arsenicoxydans] Length = 227 Score = 112 bits (280), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 126/231 (54%), Gaps = 16/231 (6%) Query: 5 LLIDDDVELVEMLKEYLEQEKFEVNVAYDGEAGAAEALSGQYAIAVLDVMMPRLNGVDTL 64 L+I+D+ ++V L +LE + ++VA G+AG A S Y + VLD+ +P L+G++ Sbjct: 4 LIIEDNPDIVANLYGFLEPLGYTLDVALTGQAGVKRATSAHYDVIVLDLELPGLDGIEVC 63 Query: 65 RRIRAKSNM--PVVMLTAKGDDTDRIIGLELGADDYVPKPCTPREIAARIRAILRRASAE 122 R++R + + P++MLTA+ D++ G E+GADDY+ KP + E+ AR++A++RRA E Sbjct: 64 RQLRKEQRLATPILMLTARDTVKDKLAGFEVGADDYLVKPFSLVELEARLKALVRRARNE 123 Query: 123 TSEQAPYSPLAVGALSMWPEQRRATWSGRPLELTSSEFNLLEVLARNAGKPVSKQILSEQ 182 E L G L + AT +G L LT + + LLE L R A ++++ L + Sbjct: 124 NVEHI----LEFGELRYDLSRCEATRAGHKLSLTPTGYKLLESLMRKAPALITREELLRE 179 Query: 183 GLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRL----GYQFIKE 229 G D + H+ ++RQ + D+ + + R GY+ IKE Sbjct: 180 IWGDDPPDSD-ALRTHIHALRQAM-----DRPFVHPMLRTLPGNGYRLIKE 224 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.134 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 386,132 Number of extensions: 14462 Number of successful extensions: 127 Number of sequences better than 1.0e-08: 22 Number of HSP's gapped: 104 Number of HSP's successfully gapped: 22 Length of query: 229 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 150 Effective length of database: 740,042 Effective search space: 111006300 Effective search space used: 111006300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)