BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2052.p (473 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093798|ref|YP_001098873.1| sensory histidine kinase in two... 101 9e-23 gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two... 100 1e-22 gi|134096138|ref|YP_001101213.1| two component sensor histidine ... 100 2e-22 gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two... 99 6e-22 gi|134095107|ref|YP_001100182.1| putative oxidative stress resis... 99 6e-22 >gi|134093798|ref|YP_001098873.1| sensory histidine kinase in two-component regulatory system with CusR, regulation of copper resistance, senses copper ions [Herminiimonas arsenicoxydans] Length = 482 Score = 101 bits (251), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 82/304 (26%), Positives = 154/304 (50%), Gaps = 25/304 (8%) Query: 172 LVASLVFALLLAWY---FSH-PIRHLKNAFNQAANGNLDLALEPVMNARNDELADLGRDF 227 L+ +L+ AL++AW+ + H PIR + + LD+ L P ELA+L F Sbjct: 183 LIVALI-ALVVAWFAVQWGHRPIRKVSREIRAIRSSQLDVRLSP--TDVPIELAELAVSF 239 Query: 228 DAMTAKLRTLMESQRRLLHDVSHELRSPIARL--QMAIGLARVQDKDKLELTLERIERES 285 + M ++ D++HELR+P+ L Q + L++V+ D+ L E Sbjct: 240 NDMLGRIEDGFAKLANFSADIAHELRTPVTNLSTQTQVALSQVRSADEYREVLYSNLEEF 299 Query: 286 VRMDKLVGELLTLSRLEANVPGSMEEPIAIQAMLADMTN--DASFEA-EALGKRVESHID 342 R+ ++G++L L++ E +P ++ D+T F+ E L + + Sbjct: 300 DRLSLMIGDMLFLAQTE-------NDPRNLRLTNTDITGLVQGLFDYFEVLAEDANITLT 352 Query: 343 CRVQVK---GNPELLYRAIENVLRNAIKHTAPETAVQFVAEIDEFNKLLHLSILDRGPGV 399 QVK + +++ RA+ N+L NAI+++ P ++V + + + K + + + G + Sbjct: 353 LSGQVKPIIADRDMMLRALSNLLSNAIRYSLPGSSV--IVRLHQDAKRTTICVENPGEQI 410 Query: 400 PEEELNSIFELFFRSSRTKSNSAGHGLGLSIARRIVEAHQGFIHAANRNDGGLRVDITLP 459 E++L +F+ FFR ++ +G GLGL+I + I+EAH G + A +RN G ++ I LP Sbjct: 411 AEDDLPKLFDRFFRVDPSRQRKSGAGLGLAIVKSIIEAHDGKVQATSRN-GLIKFLIELP 469 Query: 460 FMAD 463 +++ Sbjct: 470 SISN 473 >gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation [Herminiimonas arsenicoxydans] Length = 921 Score = 100 bits (250), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 123/237 (51%), Gaps = 26/237 (10%) Query: 238 MESQR---RLLHDVSHELRSPIARLQMAIGLARVQDKDKLELTLERIE------RESVRM 288 MES+R LL +SH+LR+P+ L +GL+ K LT + E E+ RM Sbjct: 679 MESERLRNSLLSALSHDLRTPLTSL---VGLSESLTMSKPPLTSSQQELAQALHDEARRM 735 Query: 289 DKLVGELLTLSRLEA-----NVPGSMEEPIAIQAMLADMTNDASFEAEALGKRVESHIDC 343 LV LL ++R+++ N+ E + A+ A + A E + R+ + Sbjct: 736 SNLVSNLLDMARIQSGEVKFNLQWLQFEEVVGSALRASQSAIAHHE---IKTRLAPDLPL 792 Query: 344 RVQVKGNPELLYRAIENVLRNAIKHTAPETAVQFVAEIDEFNKLLHLSILDRGPGVPEEE 403 V+ + L+ R + N++ NA K+T + + AEI + L +S+ D GPG+P + Sbjct: 793 ---VRFDAVLIERVLCNLIENAAKYTPAGSRIVIAAEIS--GRFLEVSVYDNGPGLPAGQ 847 Query: 404 LNSIFELFFRSSRTKSNSAGHGLGLSIARRIVEAHQGFIHAANRNDGGLRVDITLPF 460 +IF+ F R R +S + G GLGL+I R IVEAHQG I AA+ DGG ++ TLP Sbjct: 848 EEAIFDKFTRGER-ESATPGVGLGLAICRAIVEAHQGTIRAAHSPDGGASINFTLPL 903 >gi|134096138|ref|YP_001101213.1| two component sensor histidine kinase protein [Herminiimonas arsenicoxydans] Length = 405 Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 129/245 (52%), Gaps = 18/245 (7%) Query: 217 NDELADLGRDFDAMTAKLRTLMESQRRLLHDVSHELRSPIARLQMAIGLARVQDKDKLEL 276 DE+ L F+ A++ L+++Q+ LL + SHELRSP+AR++MAI L + ++ Sbjct: 176 QDEVGRLASSFNRSAARIEALVDAQKALLANASHELRSPLARIRMAIELMGPAAQPEIRS 235 Query: 277 TLERIERESVRMDKLVGELLTLSRLEANVPGSME-EPIAIQAMLADMTNDASFEAEALGK 335 L+R E +D+L+ E+L SRL+A + E I + A+LA+ Sbjct: 236 ELKRNIGE---LDQLIDEILLASRLDATADATQTFETIDLTALLAEEC-----------A 281 Query: 336 RVESHIDCR-VQVKGNPELLYRAIENVLRNAIKHTAPETAVQFVAEIDEFNKLLHLSILD 394 R+ + +D + +++ G+ LL R + N+L NA ++ +T + N +L L + D Sbjct: 282 RIGAQLDAQAIELSGDARLLRRLVRNLLENARRY-GNDTPITVTLAAAPGNTVL-LQVCD 339 Query: 395 RGPGVPEEELNSIFELFFRSSRTKSNSAGHGLGLSIARRIVEAHQGFIHAANRNDGGLRV 454 GPGVP E +IFE F+R + G GLGLS+ R+I H G + R++ G Sbjct: 340 GGPGVPVAERENIFEPFYRVAGASEREGGVGLGLSLVRQIARRHGGDVVYVARDEPGSCF 399 Query: 455 DITLP 459 +TLP Sbjct: 400 RVTLP 404 >gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two-component regulatory system with QseB, regulates flagella and motility by quorum sensing [Herminiimonas arsenicoxydans] Length = 430 Score = 98.6 bits (244), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 76/305 (24%), Positives = 143/305 (46%), Gaps = 14/305 (4%) Query: 166 MPIAVALVASLVFALLLAWYFSHPIRHLKNAFNQAANGNLDLALEPVMNARND-ELADLG 224 +P V + +F ++ +P+ HL A + ++ ALEP+ R EL + Sbjct: 109 LPFLVMIPVLALFIWIVVGRSLYPLHHLARAIGRRSSN----ALEPLPGERYPPELQPML 164 Query: 225 RDFDAMTAKLRTLMESQRRLLHDVSHELRSPIARLQMAIGLARVQDKDKLELT-LERIER 283 + + +L + +QR + D +HELR+P+ L++ + L ++ D+ T ++ Sbjct: 165 AALNDLLTRLDQTLVTQRAFVADAAHELRTPLTALKLQLQLVERENDDRQRATGFRKLHE 224 Query: 284 ESVRMDKLVGELLTLSRLEANVPGSMEEPIAIQAMLADMTNDASFEAEALGKRVESHIDC 343 R LV +LLTL+R E + + I ++ + A + +D + +AE G + I+ Sbjct: 225 RLNRATHLVQQLLTLARHEYRIADRSSQKIDLRQLTARVVSDYAPQAEHKGVDLGIAIND 284 Query: 344 R-----VQVKGNPELLYRAIENVLRNAIKHTAPETAVQFVAEIDEFNKLLHLSILDRGPG 398 + GN + L + N++ NA+++T V + + L + D GPG Sbjct: 285 DQGSDAAMITGNQDSLRILLGNLVDNAVRYTPSHGRVDVTVNTSTADHTVLLRVKDNGPG 344 Query: 399 VPEEELNSIFELFFRSSRTKSNSAGHGLGLSIARRIVEAHQGFIHAANRND-GGLRVDIT 457 +P ++ +F+ F+R R + +G GLGL IA+ I H+ I + + GGL V + Sbjct: 345 IPVQDQERVFDRFYR--RDGTGESGSGLGLFIAKTIATQHEATIELSTADSKGGLIVTVR 402 Query: 458 LPFMA 462 P + Sbjct: 403 FPLLC 407 >gi|134095107|ref|YP_001100182.1| putative oxidative stress resistance two-coponent transmembrane sensor histidine kinase transcription regulator [Herminiimonas arsenicoxydans] Length = 455 Score = 98.6 bits (244), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 113/468 (24%), Positives = 213/468 (45%), Gaps = 52/468 (11%) Query: 4 LFWKFFFIAIAQITATFGVGVLFW--VENLERSNRNAEIDSSPPASFMIRAAAATLQFGG 61 LFW+ FF+ I A+ + + VE R+N+ A S ++ A L Sbjct: 15 LFWRTFFLLAFLIAASMAAWIASYRAVEETPRANQIAAQVIS-----VVTITRAALTHSA 69 Query: 62 PEALRSLI-----NEGRPHRMQLYAVNEEN--QDLMGREVPQHLVEQARHLLTTENERRV 114 P+ R L+ NEG +++Y + + + + + V + + E R L + R Sbjct: 70 PDLRRELLFDLSSNEG----IRVYPLEDTDRVEPPIENSVVRSIQESVRAALGKDT--RF 123 Query: 115 VELVKAANGHSYLMFIQLPTDEFGRPPDDGILQHEARYMKRHGVKPLFFPTMPIAVALVA 174 V G + + + DE+ ++ +R GV+ + + + ++L+ Sbjct: 124 ARTVNDVAG--FWVSFTIADDEYW------LMLDRSRVEASFGVQWIGWGAATLLLSLLG 175 Query: 175 SLVFALLLAWYFSHPIRHLKNAFNQAANGNLDLALEPVMNARNDELADLGRDFDAMTAKL 234 +L+ + L+ + P+ L A ANG P+ + E+ + F+ M L Sbjct: 176 ALMISGLI----NQPLARLTAATRAIANGQWP---APLPESGPTEIREANHSFNQMVDDL 228 Query: 235 RTLMESQRRLLHDVSHELRSPIARLQMAIGLARVQDKDKLELTLERIERESVRMDKLVGE 294 + + +L +SH+LR+P+AR+Q+ + +A + D + + ++ + +MD ++G+ Sbjct: 229 NRVESDRAVVLAGISHDLRTPLARMQLEVEMAGLPDDAR-----KGMQSDLEQMDAIIGQ 283 Query: 295 LLTLSRLEANVPGSMEEPIAIQAMLADMTNDASFEAEALGKRVESHIDCRVQVKGNPELL 354 L ++ V S + + + A+L++ ++A A +V ++ +V V GN + Sbjct: 284 FLDYAK---PVDSSHFKSVDLTALLSEAAHEA---ARLPDVQVHPFMEDKVTVLGNAIDI 337 Query: 355 YRAIENVLRNAIKHTAPETA----VQFVAEIDEFNKLLHLSILDRGPGVPEEELNSIFEL 410 R + N++ NA ++ A + I E +K++ L I D G GVP EE+ + Sbjct: 338 KRVVNNLVENARRYGKATDAHHVDIDICCRI-EGDKVM-LEIADHGAGVPAEEIARLLRP 395 Query: 411 FFRSSRTKSNSAGHGLGLSIARRIVEAHQGFIHAANRNDGGLRVDITL 458 F R + + G GLGL+I RIV+ H G +H NR+ GGL V I L Sbjct: 396 FTRMDSARGQANGAGLGLAIVDRIVKRHGGKLHLFNRDGGGLTVQIVL 443 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 855,608 Number of extensions: 33855 Number of successful extensions: 194 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 165 Number of HSP's successfully gapped: 20 Length of query: 473 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 388 Effective length of database: 720,272 Effective search space: 279465536 Effective search space used: 279465536 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)