BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2050.p
         (303 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094579|ref|YP_001099654.1| hypothetical protein HEAR1354 [...   517   e-148
gi|134096548|ref|YP_001101623.1| hypothetical protein HEAR3401 [...   131   4e-32

>gi|134094579|ref|YP_001099654.1| hypothetical protein HEAR1354
           [Herminiimonas arsenicoxydans]
          Length = 311

 Score =  517 bits (1332), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 243/284 (85%), Positives = 270/284 (95%)

Query: 19  QTVKVVPQQHAWVVERLGKYHATLAPGLNIVVPFIDRVAYKHVLKEIPLDVPPQVCITKD 78
           +T+ VVPQQHAWVVERLGKYHATL PGL IV+PFIDR+AYKH LKEIPLDVP QVCITKD
Sbjct: 22  KTINVVPQQHAWVVERLGKYHATLGPGLKIVLPFIDRIAYKHSLKEIPLDVPMQVCITKD 81

Query: 79  NTQLQVDGILYFQITDPMRASYGSSNYIAAITQLAQTTLRSVIGKMELDKTFEERDHINT 138
           NTQL+VDGILYFQ+TDPMRASYGSSNYI+AI+QLAQTTLRSVIG+MELDKTFEERD IN 
Sbjct: 82  NTQLEVDGILYFQVTDPMRASYGSSNYISAISQLAQTTLRSVIGRMELDKTFEERDLINH 141

Query: 139 AIVSAIDESAENWGVKVLRYEIKDLTPPKEILHAMQAQITAEREKRALIAASEGRKQEQI 198
           ++V A+DESA NWGVKVLRYEIKDLTPP+EILHAMQ+QITAEREKRALIAASEGRKQEQI
Sbjct: 142 SVVGAVDESAANWGVKVLRYEIKDLTPPREILHAMQSQITAEREKRALIAASEGRKQEQI 201

Query: 199 NIATGEREAAIARSEGEKQASINRAQGQAAAILAIAEASAEAIRKTAAAIQQPGGSDAVN 258
           NIA GEREA+IARSEGEKQA+INRAQG+A+AIL+IAEA+AEAIRKTA+AI++PGGSDAVN
Sbjct: 202 NIANGEREASIARSEGEKQAAINRAQGEASAILSIAEATAEAIRKTASAIREPGGSDAVN 261

Query: 259 LKVAEQYVDAFGKLAKANNSIIVPANLSDMSGLIASALQVVKQQ 302
           LKVAEQYV+AFGKLAK NNSII+PANL DM GLIA+A+QVVK Q
Sbjct: 262 LKVAEQYVEAFGKLAKTNNSIIIPANLGDMGGLIATAMQVVKSQ 305


>gi|134096548|ref|YP_001101623.1| hypothetical protein HEAR3401
           [Herminiimonas arsenicoxydans]
          Length = 259

 Score =  131 bits (329), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 72/188 (38%), Positives = 112/188 (59%), Gaps = 2/188 (1%)

Query: 9   IFFLA-IVFVVQTVKVVPQQHAWVVERLGKYHATLAPGLNIVVPFIDRVAYKHVLKEIPL 67
            F LA IVF+   +K+  +    VV  LG++     PGL I++P I +V  +  L+ + L
Sbjct: 11  FFILAVIVFLASAIKIFREYERGVVFTLGRFWKVKGPGLVIIIPLIQQVV-RVDLRTVVL 69

Query: 68  DVPPQVCITKDNTQLQVDGILYFQITDPMRASYGSSNYIAAITQLAQTTLRSVIGKMELD 127
           +VP Q  I++DN  ++V  ++YF+I DP +A    +NY+ A +QLAQT LRSV+GK  LD
Sbjct: 70  EVPTQDVISRDNVSVKVSAVVYFRIIDPQKAIIQVANYLNATSQLAQTMLRSVLGKHALD 129

Query: 128 KTFEERDHINTAIVSAIDESAENWGVKVLRYEIKDLTPPKEILHAMQAQITAEREKRALI 187
               ER+ +N  I  ++D   ++WG+KV   EIK +   + ++ A+  Q  AERE+RA +
Sbjct: 130 DMLAEREKLNHDIQESLDVQTDSWGIKVSNVEIKQVDLTESMIRAIARQAEAERERRAKV 189

Query: 188 AASEGRKQ 195
             +EG  Q
Sbjct: 190 IHAEGELQ 197


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.130    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 448,567
Number of extensions: 15399
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 2
Length of query: 303
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 222
Effective length of database: 733,452
Effective search space: 162826344
Effective search space used: 162826344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)