BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2049.p
         (144 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094578|ref|YP_001099653.1| hypothetical protein HEAR1353 [...   121   1e-29

>gi|134094578|ref|YP_001099653.1| hypothetical protein HEAR1353
           [Herminiimonas arsenicoxydans]
          Length = 150

 Score =  121 bits (304), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/142 (47%), Positives = 91/142 (64%), Gaps = 1/142 (0%)

Query: 1   MTDWSLWLVLAGGLLGAELFTGSFYLLMIALGLVAGAIAAWCGLMLEWQLLVAAVVGVAA 60
           MTDW +W  +A  L+  E+ TG+FYLLMIA+G + G I A  G    WQ ++AAV+   A
Sbjct: 1   MTDWMIWFAVACVLIILEMATGTFYLLMIAIGAITGGIVALSGASGTWQCILAAVIAAVA 60

Query: 61  VLGLRHSPYGRLRRSSANDDPNVLLDIGQSIEVPAWQA-HGQQYLARVPYRGAQWDVELL 119
              LR S +GR     A+ DP+V LDIGQ++EV  W+   G +  ARV YRGA WDVEL 
Sbjct: 61  TFALRRSRFGRTENPDASRDPDVNLDIGQTLEVAEWRTVSGAKSTARVMYRGAPWDVELA 120

Query: 120 PGHHALPGSYVIREIRGSRLLV 141
            G  A+ G + I+E++G+RL+V
Sbjct: 121 SGGTAVAGQFRIQEVQGNRLIV 142


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.325    0.141    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 212,233
Number of extensions: 7030
Number of successful extensions: 27
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 1,000,347
Length adjustment: 73
Effective length of query: 71
Effective length of database: 759,812
Effective search space: 53946652
Effective search space used: 53946652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 124 (52.4 bits)