BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2048.p
         (804 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094577|ref|YP_001099652.1| phosphoenolpyruvate synthase [H...  1441   0.0  

>gi|134094577|ref|YP_001099652.1| phosphoenolpyruvate synthase
           [Herminiimonas arsenicoxydans]
          Length = 812

 Score = 1441 bits (3731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 693/812 (85%), Positives = 748/812 (92%), Gaps = 9/812 (1%)

Query: 1   MSNAVNT--------QGAVYVASFENLRMTDVESVGGKNASLGEMISQLAGAGVRVPGGF 52
           MSN VNT        +G  YV SFE+LRM+DV+SVGGKN+SLGEMISQLA AGVRVPGGF
Sbjct: 1   MSNVVNTGIKHDQVVEGN-YVISFEHLRMSDVDSVGGKNSSLGEMISQLAEAGVRVPGGF 59

Query: 53  ATTAQAFRDFLEHSADGGPTLAARIAKRLEGLDIDDVRALAQAGAEIRQWIVETPFQPRL 112
           ATTAQAFRDFLEHS  GG +LA RIA RL  LDIDDVRALAQAGAEIRQWIVETPF PRL
Sbjct: 60  ATTAQAFRDFLEHSEGGGLSLAQRIADRLADLDIDDVRALAQAGAEIRQWIVETPFPPRL 119

Query: 113 DQEIRAFYDKLVADSTAEMSFAVRSSATAEDLPDASFAGQQETFLNVVGIDNVLEAMKHV 172
             EI  +Y  L +DS+ EMSFAVRSSATAEDLPDASFAGQQETFLNVVGIDNVLEA+KHV
Sbjct: 120 LNEITQYYHNLSSDSSKEMSFAVRSSATAEDLPDASFAGQQETFLNVVGIDNVLEAIKHV 179

Query: 173 FASLYNDRAISYRVHKGFTHAEVALSAGVQRMVRSDVGAAGVMFTIDTESGFKDVVFITS 232
           FASLYNDRAISYRVHKGFTHAEVALSAGVQRMVRSD+G+AGVMFT+DTESGF DVVFITS
Sbjct: 180 FASLYNDRAISYRVHKGFTHAEVALSAGVQRMVRSDLGSAGVMFTMDTESGFTDVVFITS 239

Query: 233 SYGLGETVVQGAVNPDEYYVHKPMLELGKQPVIRRNLGSKLIKMEFTGEAKAGRSVKTVD 292
           SYGLGETVVQGAVNPDE+YVHKPMLE G+ P+IRRN+GSKLIKMEFT EAKAG SV+TVD
Sbjct: 240 SYGLGETVVQGAVNPDEFYVHKPMLEQGRLPIIRRNIGSKLIKMEFTAEAKAGHSVQTVD 299

Query: 293 VPVELRNRYSLTDAEVVELAKYATIIEKHYQRPMDIEWGKDGRDGKLYILQARPETVKSQ 352
           VP+ +RNRYSLTD E+V+LAKYA IIEKHY RPMDIEWGKDG DG+LYILQARPETVKSQ
Sbjct: 300 VPIGMRNRYSLTDEEIVQLAKYAVIIEKHYGRPMDIEWGKDGLDGQLYILQARPETVKSQ 359

Query: 353 QKATDAQQRFKLKSSGTVLATGRAIGQKIGAGPVRVISDPAEMERVQPGDVLVADMTDPN 412
           QKATD QQRFK+K SGTVL  GRAIGQKIGAGPVRVI D A+MERVQPGDVLVADMTDPN
Sbjct: 360 QKATDVQQRFKMKGSGTVLTVGRAIGQKIGAGPVRVILDAADMERVQPGDVLVADMTDPN 419

Query: 413 WEPVMKRASAIVTNRGGRTCHAAIIARELGVPAVVGCGDATEVLKDGNLVTVSCAEGDEG 472
           WEPVMKRASAI+TNRGGRTCHAAIIARELGVPAVVGCGDATE+LKDG LVTVSCAEGDEG
Sbjct: 420 WEPVMKRASAIITNRGGRTCHAAIIARELGVPAVVGCGDATELLKDGALVTVSCAEGDEG 479

Query: 473 KIYDGLLETEVTEVARGELPPIPLKVMMNVGNPQLAFDFQSIPNGGVGLARLEFIINNNI 532
           K+YDGLLE+EVTE+ARG+LP +PLK+ +NVGNPQLAFDFQSIPN GVGLARLEFIINNNI
Sbjct: 480 KVYDGLLESEVTEIARGDLPELPLKITLNVGNPQLAFDFQSIPNAGVGLARLEFIINNNI 539

Query: 533 GVHPKAILEYPNIDADLKKAVESVARGHASPKAFYVDKLAEGIATIAAAFWPKPVIVRLS 592
           GVHPKAILEYPNID DLKKAVESVARGHASPKAFY+DKLAEGIATI AAFWPKPVIVRLS
Sbjct: 540 GVHPKAILEYPNIDPDLKKAVESVARGHASPKAFYIDKLAEGIATIGAAFWPKPVIVRLS 599

Query: 593 DFKSNEYKKLIGGSRYEPDEENPMLGFRGAARYLAHDFAEAFQMECQAMKRVREDMGLTN 652
           DFKSNEYKKLIGGSRYEPDEENPMLGFRG ARYLA DFAEAF+MEC+AMKRVR+DMGLTN
Sbjct: 600 DFKSNEYKKLIGGSRYEPDEENPMLGFRGVARYLAPDFAEAFEMECKAMKRVRDDMGLTN 659

Query: 653 VEVMVPFVRTLGQAEKVIGLLGKYGLKRGENGLRVIMMCEVPSNAILADQFLEHFDGFSI 712
           VE+MVPFVRTLGQAEKVI LL K GLKRGENGLR+IMMCEVPSNAILA++FL +FDGFSI
Sbjct: 660 VEIMVPFVRTLGQAEKVIDLLAKNGLKRGENGLRIIMMCEVPSNAILAEEFLNYFDGFSI 719

Query: 713 GSNDLTQLTLGLDRDSGMELLAADFDERDPAVQALLTKVITTCREKGKYVGICGQGPSDH 772
           GSNDLTQLTLGLDRDSGME+LAADFDERDPAV AL ++ I  CR++GKYVGICGQGPSDH
Sbjct: 720 GSNDLTQLTLGLDRDSGMEILAADFDERDPAVLALFSRAIAACRKQGKYVGICGQGPSDH 779

Query: 773 PDFAQWLMEQGIESISLNPDTVIDTWQQLAKK 804
           PDFA+WLM++GI S+SLNPD+VI+TWQ LAK+
Sbjct: 780 PDFAEWLMKEGITSLSLNPDSVIETWQSLAKR 811


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,544,206
Number of extensions: 66494
Number of successful extensions: 216
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 1
Length of query: 804
Length of database: 1,000,347
Length adjustment: 89
Effective length of query: 715
Effective length of database: 707,092
Effective search space: 505570780
Effective search space used: 505570780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)