BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2047.p
         (280 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094576|ref|YP_001099651.1| hypothetical protein HEAR1351 [...   474   e-135

>gi|134094576|ref|YP_001099651.1| hypothetical protein HEAR1351
           [Herminiimonas arsenicoxydans]
          Length = 281

 Score =  474 bits (1219), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 220/267 (82%), Positives = 248/267 (92%)

Query: 14  RTVFFVSDGTGITAETFGHSVLSQFELRFKQVRLPFIDTLEKAHDATRKINEAYSVDGKL 73
           RTVFF+SDGTGITAETFGHSVL+QF+LRFKQ+RLPFIDTL+KAHDA RKIN+AY +DG+ 
Sbjct: 13  RTVFFISDGTGITAETFGHSVLTQFDLRFKQIRLPFIDTLDKAHDALRKINDAYELDGQR 72

Query: 74  PIVFSTLVKSELSSVIRRAKAMHMDLFQTFVEPLEQELEMKSTHTIGRSHNTTDSEEYRN 133
           PI+FSTLVK+ LS V+R++K MHMDL QTFVEPLEQEL +KSTHTIGRSH +TDSEEY+N
Sbjct: 73  PIIFSTLVKANLSKVVRQSKGMHMDLIQTFVEPLEQELGVKSTHTIGRSHTSTDSEEYKN 132

Query: 134 RIEAINFSLAHDDGQSNKNLSEADVILVGVSRSGKTPTSLYLAMQFGIKCANYPLIPEDF 193
           RIEAINFSLAHDDGQSNKNL+EADVILVGVSRSGKTPTSL+LAMQ+GIK ANYPLIP+DF
Sbjct: 133 RIEAINFSLAHDDGQSNKNLAEADVILVGVSRSGKTPTSLFLAMQYGIKAANYPLIPDDF 192

Query: 194 EREKLPSGLVMHKKKIFGLTIAAERLSEVRNERRPGSKYAALENCRYEINEAEKMMRREG 253
            REKLP GL+ +K KIFGL+IA +RL+E+RNER PGSKYAAL NCRYE+NEAEKMMRREG
Sbjct: 193 AREKLPGGLLEYKSKIFGLSIAPDRLAEIRNERLPGSKYAALANCRYEVNEAEKMMRREG 252

Query: 254 IRWMSSTTKSIEEIAATILQEIKLETR 280
           IRWMSSTTKSIEEI+ATILQEIK E R
Sbjct: 253 IRWMSSTTKSIEEISATILQEIKSEHR 279


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.132    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 489,094
Number of extensions: 18177
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 199
Effective length of database: 733,452
Effective search space: 145956948
Effective search space used: 145956948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)