BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2045.p
         (263 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094575|ref|YP_001099650.1| putative tRNA/rRNA methyltransf...   338   2e-94
gi|134094504|ref|YP_001099579.1| tRNA (guanosine-2'-O-)-methyltr...    82   3e-17

>gi|134094575|ref|YP_001099650.1| putative tRNA/rRNA
           methyltransferase [Herminiimonas arsenicoxydans]
          Length = 265

 Score =  338 bits (866), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 159/259 (61%), Positives = 205/259 (79%)

Query: 2   KLITSKDNPVFKDLKQLATSSQARRRAGQSLLDGVHLAQAWLQHRGAPQVCVVAESAQYH 61
           K+I+S+DNP++K+LK LATSSQARR+AG++LLDG+HL +A+LQ  G P +C+ +E+A  +
Sbjct: 4   KIISSRDNPLYKELKHLATSSQARRKAGRTLLDGIHLCEAYLQQVGLPPLCIASETALLN 63

Query: 62  PEVAPILAQCEALHAQCLVLADRLYDAISTVENGVGLLLLVTTPEPAAPTSLKESAVLLD 121
            EV  I+ QC   H QC+VL D L+ A+S VE+GV +L ++ TPE   P  L +SAVLLD
Sbjct: 64  SEVTVIVQQCIHSHTQCIVLPDALFHALSQVEHGVDILFVIDTPELTEPQRLLQSAVLLD 123

Query: 122 GLQDPGNLGSILRSAAAAGVKQVFCSPGTAAAWSPKVLRAGMGAHFVLDIFENADLVALC 181
            +QDPGN GSI+RSAAAAG+KQVFCS GT  AWSPKV+RAGMGAHF+++IFEN DL AL 
Sbjct: 124 RVQDPGNFGSIVRSAAAAGIKQVFCSAGTTFAWSPKVMRAGMGAHFLMEIFENVDLEALI 183

Query: 182 AASRIPLLATSSHAAQTIYDCDLSGPVAWLLGHEGQGVSAALQDAATHEVVIPHLGEMES 241
           A + IP++ATSSHA + +YD DL+ PVAWL GHEGQGV+  L   ATH++ IPHLG +ES
Sbjct: 184 ARADIPVIATSSHAEKRLYDLDLTQPVAWLFGHEGQGVTEHLLALATHQITIPHLGAIES 243

Query: 242 LNVAAAAAVCLFEQLRQRT 260
           LNVAA++AVC FEQ+RQ T
Sbjct: 244 LNVAASSAVCFFEQVRQIT 262


>gi|134094504|ref|YP_001099579.1| tRNA
           (guanosine-2'-O-)-methyltransferase [Herminiimonas
           arsenicoxydans]
          Length = 247

 Score = 82.0 bits (201), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 3/145 (2%)

Query: 118 VLLDGLQDPGNLGSILRSAAAAGVKQVFCSPGTAAAWSPKVLRAGMGAHFVLDIFENADL 177
           ++LDG+ DP NLG+ LR A  AG   V      A   +    +   GA   +      +L
Sbjct: 98  LVLDGITDPHNLGACLRVADGAGAHAVIAPKDRAVGLNATAAKVASGAADTVPYITVTNL 157

Query: 178 VALCAASR---IPLLATSSHAAQTIYDCDLSGPVAWLLGHEGQGVSAALQDAATHEVVIP 234
                  +   I L+ T+  + + +Y+ D SGP A ++G EG+G+    ++     V IP
Sbjct: 158 ARTLRELKERDILLIGTTDDSEKGLYEADFSGPAALIMGSEGEGMRRLTRETCDVLVSIP 217

Query: 235 HLGEMESLNVAAAAAVCLFEQLRQR 259
             G +ESLNV+ A+ VCL+E  RQR
Sbjct: 218 MFGSVESLNVSVASGVCLYEARRQR 242


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.131    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 509,719
Number of extensions: 20317
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 2
Length of query: 263
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 183
Effective length of database: 736,747
Effective search space: 134824701
Effective search space used: 134824701
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)