BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2044.p
         (210 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094574|ref|YP_001099649.1| ribonuclease HII [Herminiimonas...   304   2e-84

>gi|134094574|ref|YP_001099649.1| ribonuclease HII [Herminiimonas
           arsenicoxydans]
          Length = 211

 Score =  304 bits (778), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 149/195 (76%), Positives = 165/195 (84%)

Query: 8   TLALFDDYTGEIICGVDEAGRGPLAGPVFAAAVILDPARPVKGLRDSKKLSEAARDSLAL 67
            L+LF     +IICGVDEAGRGPLAGPVFAAAVILDP RP+ GL DSKKLSE  RD+LA+
Sbjct: 8   NLSLFSSLDEDIICGVDEAGRGPLAGPVFAAAVILDPMRPIDGLCDSKKLSEVRRDALAI 67

Query: 68  EIKESALAWAIASCNEQEIDELNILHASMLAMRRAVESLSTLPTLALIDGNRCPVMSIRS 127
           +IK  AL+W+IA C+EQEID LNIL A+MLAMRRAVE L   PTLALIDGNRCPVM +R+
Sbjct: 68  DIKAHALSWSIAQCSEQEIDSLNILQATMLAMRRAVEGLHIQPTLALIDGNRCPVMVVRA 127

Query: 128 EAIVKGDDKVPAISAASILAKTARDAALMVLHDTYPHYGFDRHKGYPTPLHLEMLRLHGV 187
           EAI+KGDDKV AISAASILAKTARD AL +LH  YPHY FD+HKGYPT LHLE LR HGV
Sbjct: 128 EAIIKGDDKVQAISAASILAKTARDHALGLLHIAYPHYAFDQHKGYPTALHLERLREHGV 187

Query: 188 SPVHRRSYAPVRALL 202
           SPVHR+SYAPVRALL
Sbjct: 188 SPVHRKSYAPVRALL 202


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 389,665
Number of extensions: 14626
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 132
Effective length of database: 743,337
Effective search space: 98120484
Effective search space used: 98120484
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)