BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2039.p
         (169 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094569|ref|YP_001099644.1| chaperone for outer membrane pr...   204   2e-54

>gi|134094569|ref|YP_001099644.1| chaperone for outer membrane
           protein [Herminiimonas arsenicoxydans]
          Length = 172

 Score =  204 bits (518), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 106/172 (61%), Positives = 133/172 (77%), Gaps = 6/172 (3%)

Query: 3   KSFLSLQTI-----VMAACLLSFAPAHAQESSKIAFVSTERIFREAAPAKAAQAKLEAEF 57
           KSF  L  +     + AA L   +   AQ+  K+  V+TERIFREAAP KAAQ K+E EF
Sbjct: 2   KSFTKLSVVSKGLTLFAAGLFVVSGVQAQDM-KVGVVNTERIFREAAPYKAAQTKIEQEF 60

Query: 58  AKRDRDLQDMAARLKAQSDKLDKDAAVLSDSDRAKRQRDLSDLDKEFQRKQREFREDLNQ 117
           +KR ++L+ +A R+K  +DKLDKDAAVLS+SDR KRQR+L + DK+FQR QREF+EDLNQ
Sbjct: 61  SKRQKELETLANRVKNLADKLDKDAAVLSESDRNKRQRELVEADKDFQRTQREFKEDLNQ 120

Query: 118 RRNEELAVVLERTNKVIRQIAESEKYDIVFQEAVYASKRIDITDKVLKELAK 169
           RRNEE+A V++RTN+VI+QIAE+EKYD+V QEAVY S R+DITDKVLK L K
Sbjct: 121 RRNEEMANVIDRTNRVIKQIAETEKYDLVLQEAVYISPRVDITDKVLKALGK 172


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.127    0.326 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 209,249
Number of extensions: 6113
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 94
Effective length of database: 753,222
Effective search space: 70802868
Effective search space used: 70802868
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)