BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2038.p
         (793 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094568|ref|YP_001099643.1| outer membrane protein sensing ...  1142   0.0  

>gi|134094568|ref|YP_001099643.1| outer membrane protein sensing
           stress [Herminiimonas arsenicoxydans]
          Length = 799

 Score = 1142 bits (2953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/806 (69%), Positives = 649/806 (80%), Gaps = 20/806 (2%)

Query: 1   MKLHPAQHPIPTFSRRLIAAAAFALCSSQAMAITPFVVKDIRVEGIQRTEAGTVFSYLPV 60
           MKLH  + P+P F R LIA AAFALCS    A  PF VKDIRVEGIQRTEAGTVFSYLPV
Sbjct: 1   MKLHSERFPLPIFRRHLIAVAAFALCSGYVQAADPFTVKDIRVEGIQRTEAGTVFSYLPV 60

Query: 61  RVGDTFNDEKATAAIKALYATGFFRDVRIEAEGEVLVVQVVERPAIASVDFSGIKEFDKE 120
           RVG+TF DEK   AIKALYATGFF+DVRIE EG+VLVV V ERPAIASV+FSG KEFDK 
Sbjct: 61  RVGETFTDEKGATAIKALYATGFFKDVRIEVEGDVLVVFVEERPAIASVEFSGTKEFDKV 120

Query: 121 QLTKALKEIGVAESRIFDRSQVDRAEQELKRQYLSRGLYGAKVTTTVTPVERNRVAITFS 180
           QLTKALKEIGV ESRIFD++ VDRAEQELKRQYLSRGLYG  +TTTVTPVERNRV+I F+
Sbjct: 121 QLTKALKEIGVGESRIFDKALVDRAEQELKRQYLSRGLYGVLITTTVTPVERNRVSINFA 180

Query: 181 VDEGEVSRIKQINFVGNKVFSDSTLRDQIKLTTPGWFTWYTKADQYSKEKLQGDIETLRS 240
           VDEG+VSRIK IN +G+K FS+  L   + L TPGWFTWY+KADQYSK+KL GDIETL+S
Sbjct: 181 VDEGDVSRIKNINIIGSKAFSEKDLIKMLSLRTPGWFTWYSKADQYSKQKLAGDIETLKS 240

Query: 241 YYLDRGYLEMQVESTQVSITPDKKDIYITVNIKEGEKYTVSGVKLEGEMFGMEPELAKLV 300
           YY +RGY+EMQVESTQVSI+PDKKDIYIT+NI EGEKYTVS +KLEGEMFG E EL  L+
Sbjct: 241 YYQNRGYIEMQVESTQVSISPDKKDIYITININEGEKYTVSDIKLEGEMFGREAELNSLL 300

Query: 301 QLKAGDVYSGAKLTESTKKIGERLGNFGYAFANVNANPNVDREKKEVSFTIMVDPGKRVY 360
           QLK GDVYSG KLT STK I ER+GNFGYAFANVNANP +DREKKEV+FT+M+DPGKRVY
Sbjct: 301 QLKKGDVYSGEKLTASTKSISERMGNFGYAFANVNANPKIDREKKEVAFTVMIDPGKRVY 360

Query: 361 VRHVNIAGNTKTRDEVIRREFRQFEDSWYDGEKIKLSRDRVDRLGYFKEVTVDTPEVPGT 420
           VR++NI+GNTKTRDEVIRRE RQFE+SWYDGEKIK+SRDRVDRL YF +VT++TP+VPG 
Sbjct: 361 VRNINISGNTKTRDEVIRRELRQFENSWYDGEKIKMSRDRVDRLDYFTDVTIETPDVPGK 420

Query: 421 SDQVDVNMKVEEKPTGNIMVGAGFSQSDKLSLTGSISQENAFGSGNTVGIDINTSSRYRT 480
           +DQVD+N+ V EKPTGNIM+GAGFS ++KL+L+G I+Q NAFGSGNT+GID+NTS   RT
Sbjct: 421 TDQVDINLGVTEKPTGNIMLGAGFSSNEKLTLSGGINQTNAFGSGNTIGIDVNTSRLNRT 480

Query: 481 ISVSTTNPYFTDDGISRTYEVYLRTIRPSVYTTGDYRVKTLGGSIKFGVPFSELDRVFFG 540
           I+VS+TNPYFTDDGISR+YE ++RT RP    +GDYR++T GG+IKFGVPFSE D VFFG
Sbjct: 481 IAVSSTNPYFTDDGISRSYEAFIRTTRPPTVNSGDYRIRTTGGNIKFGVPFSEFDTVFFG 540

Query: 541 IGVENTDVS-------TDSTSPSLYRQYVRDFGGAGSAGCDVTDVSSTATCGIGSARTTS 593
            GVE T+V        + S SP ++++YV         G  + +  S    G  SA  T 
Sbjct: 541 AGVERTEVEVYKGLAPSYSDSPEVFQRYVNSI-----KGLPLPNDFSGYPDGKRSASATG 595

Query: 594 IPLTVAWQRDGRDSALVPTSGRYQRANLEVSYLGTLKYYRASYQHQYFQPFFSKAVTLAL 653
           IPLT AWQRD RDSALVPT GRYQRAN E+S  G   Y+R +YQHQ+F+P F  + TLAL
Sbjct: 596 IPLTAAWQRDNRDSALVPTKGRYQRANFEISPGGDSTYFRTTYQHQWFKPLFGGSTTLAL 655

Query: 654 NGEVDYGRGIGGKPYPVFKNYYAGGIGTVRGYEASSLGNLKDQYGDSMGGASRLYGNVEL 713
           NGEV+YG+G+GGK YP+FKN+YAGGIG+VRGYE SS+G      GD +GG+SR+  N EL
Sbjct: 656 NGEVNYGKGLGGKDYPIFKNFYAGGIGSVRGYEGSSIGPKAKSNGDPLGGSSRVIANAEL 715

Query: 714 QFPFPGSGQDRTLRWFTFFDGGNVFADGENIKLNDLRYSAGVGISWVSPIGPLKLSFGKP 773
           QFPFPGSG DRTLRWFTFFD GNV+ADG       ++ S G+G+SWVSP+GPLKLSFGK 
Sbjct: 716 QFPFPGSGTDRTLRWFTFFDAGNVYADG--FGGGGMKTSVGIGLSWVSPLGPLKLSFGKA 773

Query: 774 LNLKTG------DKSQTFQFQLGTGF 793
           LN  T       D++Q FQFQ+GTGF
Sbjct: 774 LNANTDGPLDQRDRTQAFQFQMGTGF 799


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,509,165
Number of extensions: 65222
Number of successful extensions: 177
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 1
Length of query: 793
Length of database: 1,000,347
Length adjustment: 89
Effective length of query: 704
Effective length of database: 707,092
Effective search space: 497792768
Effective search space used: 497792768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)