BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2037.p
         (457 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094567|ref|YP_001099642.1| membrane-associated metalloprot...   628   0.0  

>gi|134094567|ref|YP_001099642.1| membrane-associated
           metalloprotease involved in RseA cleavage [Herminiimonas
           arsenicoxydans]
          Length = 455

 Score =  628 bits (1619), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/457 (67%), Positives = 373/457 (81%), Gaps = 6/457 (1%)

Query: 1   MNLLHTLIAFFVALGTLVVVHELGHYLVARWCGVKVLRFSVGMGRVIWSRRFGRDQTEWA 60
           M+ L TL+AF V LG L++VHELGHYLVARWCGVKVLRFSVGMG+VI+SRRFG+DQTEWA
Sbjct: 1   MHFLQTLLAFAVVLGVLIIVHELGHYLVARWCGVKVLRFSVGMGKVIYSRRFGKDQTEWA 60

Query: 61  ISVLPLGGYVKMLDAREQPLEDIPAADLKREFTRQSVWRRIAIVAAGPLANFLLAILLFA 120
           +SVLPLGGYVKMLDARE  L ++ A D+KREFTRQSVWRRIAIVAAGPLANFLLAILLFA
Sbjct: 61  VSVLPLGGYVKMLDAREGDLSEVSAEDMKREFTRQSVWRRIAIVAAGPLANFLLAILLFA 120

Query: 121 GLYMHGVPEPVPVLRGATEQSAAYQAGLRAGDRITAINGAPVQVWSEVRWKLMQLVLEKA 180
           GLY +G+PEP P LR   EQS AYQAG+R G+ +T +NG P+Q+W+++RW+++Q V+ K 
Sbjct: 121 GLYSYGIPEPAPKLRAPAEQSIAYQAGVRGGELVTVVNGKPIQIWNDLRWQMVQAVINKK 180

Query: 181 DARIDVER--PNPAGNGKLLDTVTLRLGGIDGNELEGDFLAKLGLALARPPAILGQIL-D 237
              +DVER   +P   GK++ TVT+ +  I   ELEGDFL KLG+ LARP AILGQ++ D
Sbjct: 181 AVTLDVERAAADPHA-GKIIRTVTIPVDSISAEELEGDFLVKLGIDLARPRAILGQVVPD 239

Query: 238 GPAKAAGLQTGDRITAIDGVPVQDGLAFVEKIRESAGKPLVLQGLRGTMPLQVRITPDTV 297
           GPA  AGLQ+GD I A++G  + DG+A V+ +R + GK L +  LR   PL V +TP+ V
Sbjct: 240 GPAMLAGLQSGDLIVAVNGNAITDGVALVDAVRAAPGKMLQIDLLRNGKPLSVNVTPEAV 299

Query: 298 EEGESGKRIGRIKVEVPLAPEMATISDAPFTAVAKGAQRTWDTSVMTIKMIGKMIVGQVS 357
           +  + G+  GRIKVEVP+ P+M   S  PF A+AKG Q+TWDTS MT+KM+GKMIVG+VS
Sbjct: 300 D--KDGQVFGRIKVEVPMMPDMVLASHGPFAALAKGVQKTWDTSTMTLKMVGKMIVGEVS 357

Query: 358 LKNITGPITIADYAGQTARVGLVSYLSFLAFISISLGVMNLLPIPVLDGGHLLYYALEIL 417
            KN+TGPITIADYAGQTAR+GL+SYLSF+AF+SISLGVMNLLPIPVLDGGHLLYYA+E+L
Sbjct: 358 WKNVTGPITIADYAGQTARIGLISYLSFIAFVSISLGVMNLLPIPVLDGGHLLYYAVEVL 417

Query: 418 TGRPVSERFGEIAQRAGLGLLMALMLVAAFNDIVRLM 454
           TGRPVSERFG IAQRAG+G+LM LMLVA FNDI RL+
Sbjct: 418 TGRPVSERFGAIAQRAGIGILMTLMLVAVFNDINRLI 454


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.141    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 877,363
Number of extensions: 38290
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 372
Effective length of database: 720,272
Effective search space: 267941184
Effective search space used: 267941184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)