BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2036.p
         (390 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094566|ref|YP_001099641.1| 1-deoxy-D-xylulose 5-phosphate ...   570   e-164

>gi|134094566|ref|YP_001099641.1| 1-deoxy-D-xylulose 5-phosphate
           reductoisomerase [Herminiimonas arsenicoxydans]
          Length = 391

 Score =  570 bits (1468), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 288/391 (73%), Positives = 322/391 (82%), Gaps = 3/391 (0%)

Query: 1   MQSISILGATGSIGVSTLDVVARHPDRYRVFALSAHARVVELAEQCQRFRPQVAVVGSAQ 60
           MQ I+ILG+TGSIGVSTLDVVARHPDRYRV AL+A  +V ELA QC +F P VAVVGSA+
Sbjct: 1   MQHITILGSTGSIGVSTLDVVARHPDRYRVHALTAQNKVEELAAQCAQFHPDVAVVGSAE 60

Query: 61  AASQLQTLLRAAGLSTEVTYGPQALCDVASADGCDMVMAAIVGAAGLASTLAAARAGKKI 120
           AA +LQ LL   GL T+V YG  ALC VASA  CD VMAAIVG AGLA TLAAARAGKKI
Sbjct: 61  AAQKLQVLLNGMGLQTQVEYGAAALCTVASAPECDCVMAAIVGGAGLAPTLAAARAGKKI 120

Query: 121 LLANKEALVISGQLLMDTVQAHGASLLPIDSEHNAIFQCLPAGYTRSM--PA-HGVEKIL 177
           LLANKEALV+SG LLM+ V A GA L+PIDSEHNAIFQC+PA Y +    PA HG+EKIL
Sbjct: 121 LLANKEALVMSGPLLMEAVAASGAILMPIDSEHNAIFQCMPATYHQQQLTPAQHGIEKIL 180

Query: 178 LTASGGPFLTRDVATFDQVTVEEAVAHPKWVMGRKISVDSATMMNKGLEVIEAHWLFGAP 237
           LTASGGPFL R + T DQVT  EA+AHPKWVMGRKISVDSATMMNKGLEVIEAHWLFG P
Sbjct: 181 LTASGGPFLNRALDTLDQVTCAEAIAHPKWVMGRKISVDSATMMNKGLEVIEAHWLFGVP 240

Query: 238 ADKIEVVIHPQSVIHSMVSYADGSVLAQLGNPDMRTPIANALAYPERIASGVAPLELAQI 297
           AD+IEVVIHPQSV+HSMVSY DGSVLAQLGNPDMRTPIA+A+AYPERI SGVAP++L +I
Sbjct: 241 ADRIEVVIHPQSVVHSMVSYIDGSVLAQLGNPDMRTPIAHAMAYPERIDSGVAPIDLIKI 300

Query: 298 AQLSFFPPDFTRFPCLKLAYDALRAGGTLAAILNAANEVAVQAFLDRRIGFGKIAPLIQE 357
           AQL+F  PD  RFPCLKLAYDAL+AGG+  AI+NAANE+AVQAFLD RIGF  I  LI  
Sbjct: 301 AQLTFEHPDLLRFPCLKLAYDALQAGGSAPAIMNAANEIAVQAFLDGRIGFRAIDQLIAR 360

Query: 358 VMSAIPNRQADDIAALLEQDRQARDHACTLI 388
           VM+A+P+    DI  + EQDR+ARD A + I
Sbjct: 361 VMAALPSSPVTDIDTVFEQDRRARDTAASFI 391


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 661,494
Number of extensions: 24244
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 306
Effective length of database: 723,567
Effective search space: 221411502
Effective search space used: 221411502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)