BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2034.p
         (252 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094564|ref|YP_001099639.1| undecaprenyl pyrophosphate synt...   401   e-113

>gi|134094564|ref|YP_001099639.1| undecaprenyl pyrophosphate
           synthetase [Herminiimonas arsenicoxydans]
          Length = 254

 Score =  401 bits (1031), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 186/248 (75%), Positives = 214/248 (86%)

Query: 1   MKHQSSTLAVPETSAVPRHVAIIMDGNGRWATKRFLPRVAGHAKGVDAVRSIVEACAERG 60
           M   SST  VP+ S VPRH+AIIMDGNGRWATKRF+PRVAGH KGV+AVR IVEACA++G
Sbjct: 1   MTPSSSTQIVPDVSLVPRHIAIIMDGNGRWATKRFMPRVAGHVKGVEAVRGIVEACAKQG 60

Query: 61  IEFLTLFAFSSENWRRPADEVSVLMRLFMTVLEREVGKMASNGICLKIVGDMSRFDPKLQ 120
           +E++T FAFSSENWRRP DEVS+LMRLFMT LEREV KM +NGI LKIVGD+SRFD KLQ
Sbjct: 61  VEYVTFFAFSSENWRRPDDEVSLLMRLFMTALEREVSKMHANGIRLKIVGDLSRFDDKLQ 120

Query: 121 EMAARAEAQTAGNSRLTLTVCANYGGRWDVMQAVSKMVKDKPGVTDYSEEELAPYLAMAY 180
           +M A AE +TA N RLT+T+CANYGGRWD+MQAV+KM    P   D+SEE+L P+L++AY
Sbjct: 121 KMIASAERKTAANDRLTVTICANYGGRWDIMQAVNKMAAAYPDAGDFSEEQLTPFLSLAY 180

Query: 181 APEPDLFIRTGGEQRISNFLLWQLAYSELYFTETFWPDFDAKALDQAIGSYQQRERRFGR 240
           APEPDLFIRTGGE+RISNFLLWQLAY+ELYFT+T+WPDFDA AL+ AI SYQQRERRFGR
Sbjct: 181 APEPDLFIRTGGEERISNFLLWQLAYTELYFTDTYWPDFDAAALELAISSYQQRERRFGR 240

Query: 241 TSAQVLDQ 248
           TSAQV  Q
Sbjct: 241 TSAQVSAQ 248


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 455,014
Number of extensions: 16883
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 172
Effective length of database: 736,747
Effective search space: 126720484
Effective search space used: 126720484
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)