BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2031.p
         (295 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094561|ref|YP_001099636.1| elongation factor Ts [Herminiim...   458   e-130

>gi|134094561|ref|YP_001099636.1| elongation factor Ts
           [Herminiimonas arsenicoxydans]
          Length = 293

 Score =  458 bits (1179), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 226/280 (80%), Positives = 248/280 (88%), Gaps = 1/280 (0%)

Query: 1   MAAITAAMVGDLRAKTDAPMMECKKALTEADGDMAKAEEILRVKLGSKASKASSRITAEG 60
           MA ITAAMVG+LRA TDAPMMECKKALTEADGD  KAEEILRVKLGSKASKA+SR+TAEG
Sbjct: 1   MAVITAAMVGELRALTDAPMMECKKALTEADGDPVKAEEILRVKLGSKASKAASRVTAEG 60

Query: 61  VISTYIAGNVGALVEVNCETDFVTKNDEFIGLVEAAAKLVVEQNPADVAALGACKLPDGK 120
           V+++ + GNVGALVEVNCETDFVTKNDEF+ L  A AKL+ E NPAD+AALGA  L DGK
Sbjct: 61  VVASCVVGNVGALVEVNCETDFVTKNDEFLALANACAKLIAEHNPADLAALGALPL-DGK 119

Query: 121 TLEELRTELIGRIGENMSFRRFQRFETSGKLASYLHGTRIGVVVEFDGADEQVGKDVAMH 180
           TLEE R ELIGRIGENMS RRF RFET+GK+ SYLHGTRIGV+V+FD ADEQVGKDVAMH
Sbjct: 120 TLEEKRAELIGRIGENMSIRRFVRFETAGKVVSYLHGTRIGVMVDFDAADEQVGKDVAMH 179

Query: 181 IAAMKPVALSAEQVPADLIEKERSVAALKAAESGKPADIVAKMVDGSVQKFLKEVSLFNQ 240
           IAAMKPVALS++ VPADLI KERSVA LKAAESGKPA+IV KMV+GSV K+LKEVSL NQ
Sbjct: 180 IAAMKPVALSSDDVPADLIAKERSVAELKAAESGKPAEIVTKMVEGSVHKYLKEVSLLNQ 239

Query: 241 AFVKNDKQSVEQMLKAANTTVKSFAMYVVGEGIEKKQDDF 280
            FVKNDKQ+VEQMLK   +TVK+F MYVVGEGIEKKQDDF
Sbjct: 240 TFVKNDKQTVEQMLKDTKSTVKAFTMYVVGEGIEKKQDDF 279


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.128    0.337 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 474,457
Number of extensions: 18592
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 214
Effective length of database: 733,452
Effective search space: 156958728
Effective search space used: 156958728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 128 (53.9 bits)