BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2030.p
         (246 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094560|ref|YP_001099635.1| 30S ribosomal protein S2 [Hermi...   446   e-127

>gi|134094560|ref|YP_001099635.1| 30S ribosomal protein S2
           [Herminiimonas arsenicoxydans]
          Length = 248

 Score =  446 bits (1147), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 212/248 (85%), Positives = 235/248 (94%), Gaps = 2/248 (0%)

Query: 1   MSVTMREMLEAGVHFGHQTRFWNPKMAPYIFGHRNKIHIVNLEKTLGMYQEALKYVRQLS 60
           MSVTMREMLEAGVHFGHQTRFWNPKMAPYIFGHRN+IHIVNLEKTLGMYQEA+KY++QLS
Sbjct: 1   MSVTMREMLEAGVHFGHQTRFWNPKMAPYIFGHRNRIHIVNLEKTLGMYQEAMKYIKQLS 60

Query: 61  ANRGTILFVGTKRQAREILATEAQRAGVPYVDQRWLGGMLTNFKTIKTSIKRLKEMEASI 120
           +NRGT+LFVGTKRQARE +A EA RAG+PYVDQRWLGGMLTNFKTIKTSIKRLKE+EA +
Sbjct: 61  SNRGTVLFVGTKRQARETIAAEAARAGMPYVDQRWLGGMLTNFKTIKTSIKRLKELEALV 120

Query: 121 EDGSVEKLSKKEGLLFRRELEKLQKAIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGI 180
           EDGS+EKLSKKE L+F RE  KL+K+IGGIKDMGGIPDAIFV+DVGYHKGAITEAAKLGI
Sbjct: 121 EDGSMEKLSKKEALMFEREKIKLEKSIGGIKDMGGIPDAIFVVDVGYHKGAITEAAKLGI 180

Query: 181 PVIGVVDTNHSPEGVTYVIPGNDDSAKAISLYARGVADAVLEGRANAVNDVVEAVK-GDE 239
           PVIGVVDTNHSPEGV Y+IPGNDDS+KAI LYARGVADA+LEGRA+A ND+VE++K GD+
Sbjct: 181 PVIGVVDTNHSPEGVAYIIPGNDDSSKAIMLYARGVADAILEGRASATNDLVESIKGGDD 240

Query: 240 FVEV-EQA 246
           FVEV EQA
Sbjct: 241 FVEVNEQA 248


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.136    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 445,891
Number of extensions: 17783
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 167
Effective length of database: 740,042
Effective search space: 123587014
Effective search space used: 123587014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)