BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2029.p
         (274 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094559|ref|YP_001099634.1| methionine aminopeptidase [Herm...   511   e-146

>gi|134094559|ref|YP_001099634.1| methionine aminopeptidase
           [Herminiimonas arsenicoxydans]
          Length = 277

 Score =  511 bits (1316), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 238/274 (86%), Positives = 256/274 (93%)

Query: 1   MGNITIKTAEDIEGMRVAGRLAAEVLDYITPFVKPGVTTGEIDRLCHEYMTNVQGSIPAP 60
           M NI+IKTAEDIEGMR+AGRL +EVLDYITPFVK GVTTGE+DRLCHEYM NVQG+IPAP
Sbjct: 1   MSNISIKTAEDIEGMRIAGRLGSEVLDYITPFVKAGVTTGELDRLCHEYMINVQGTIPAP 60

Query: 61  LNYCPPGYTPYPKAICTSLNDVICHGIPGDKVMKNGDVLNIDVTIIKNGYHGDTSRMFYL 120
           LNYCPPGYTPYPKAICTS+NDVICHGIPGDKV+KNGD +N+D+T+IKNGYHGDTSRMF +
Sbjct: 61  LNYCPPGYTPYPKAICTSVNDVICHGIPGDKVLKNGDSVNLDITVIKNGYHGDTSRMFLI 120

Query: 121 GEPSILARRLTEITYECMWLGISKIKPGAHLGDIGHVIQQHAEKAGYSVVREFCGHGIGK 180
           GEPSILA+RL+EITYECMWLGISKIKPGAHLGDIGH+IQQHAE AGYSVVREFCGHGIGK
Sbjct: 121 GEPSILAKRLSEITYECMWLGISKIKPGAHLGDIGHIIQQHAENAGYSVVREFCGHGIGK 180

Query: 181 VFHEEPQVLHYGRPGTLEKLEAGMIFTVEPMINAGRREIREMGDGWTIKTKDRSLSAQWE 240
           VFHEEPQVLHYGRPGTLEKL AGMIFTVEPMINAGRRE+REM DGWTIKTKDRSLSAQWE
Sbjct: 181 VFHEEPQVLHYGRPGTLEKLAAGMIFTVEPMINAGRREVREMNDGWTIKTKDRSLSAQWE 240

Query: 241 HTVLVTETGFEVLTVSPGMPAPPAFIQNQVATPA 274
           HTVLVTETG+E+LT S G P PPAFI  Q A  A
Sbjct: 241 HTVLVTETGYEILTQSAGTPPPPAFIVPQTAVQA 274


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.139    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 575,803
Number of extensions: 24539
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 194
Effective length of database: 736,747
Effective search space: 142928918
Effective search space used: 142928918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)