BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2028.p
         (850 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094558|ref|YP_001099633.1| uridylyltransferase [Herminiimo...  1139   0.0  

>gi|134094558|ref|YP_001099633.1| uridylyltransferase [Herminiimonas
           arsenicoxydans]
          Length = 695

 Score = 1139 bits (2946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/694 (76%), Positives = 604/694 (87%)

Query: 156 LDPLAFFQAKTLEMRQRHVKYEDTPYSLEPNCKESPGGLRDLQVILWVAKAAGLGNSWAE 215
           +DP AFFQAKTLE+RQRH KYEDTPYSLEPNCKESPGGLRDLQVILWVAKAAGLG+SW +
Sbjct: 1   MDPQAFFQAKTLELRQRHAKYEDTPYSLEPNCKESPGGLRDLQVILWVAKAAGLGDSWPK 60

Query: 216 LAQHGMLTSTEARQLRQKERAFKDIRIRLHILTDRREDRLVFDIQTPIAETFGFKTTDTR 275
           LA+ G++T TEARQL+QKERA K++RIRLHI+ +R EDRLVFDIQT IAE+ GFK+TD R
Sbjct: 61  LAERGLITPTEARQLKQKERALKEVRIRLHIIANRHEDRLVFDIQTAIAESIGFKSTDAR 120

Query: 276 RASEYLMQRYYWAAKAVTQLNTILLQNIEAHLFPQQSVPRPLNERFSEVNGFLDIAHDNI 335
           RASEYLMQRYY AAKAVTQLN ILLQNIEA LFPQ + P  +NERF+E+NGF+DIA D+ 
Sbjct: 121 RASEYLMQRYYLAAKAVTQLNAILLQNIEAQLFPQMTSPVAINERFNEINGFIDIADDHT 180

Query: 336 FEETPSAMLEVFLMLSEHPELKDMSARTLRALWHARFKIDNAFRANPENHRLFMQIIQSK 395
           F+ TPSAMLEVFL+LS HPELK M+ART R+LW+ARFKIDN FR +P N  LFM+I+Q+ 
Sbjct: 181 FDVTPSAMLEVFLLLSLHPELKGMTARTFRSLWNARFKIDNKFRRDPVNRALFMKILQAP 240

Query: 396 RGITHALRGMNATSVLGRYLPNFRQIVGQMQHDLFHVYTVDQHILMVVRNVRRFTMSEHA 455
           +GITHALR MN TSV+GRYLPNFR+IVGQMQHDLFHVYTVDQHI+MVVRNVRRF +S+HA
Sbjct: 241 QGITHALRRMNETSVIGRYLPNFRKIVGQMQHDLFHVYTVDQHIMMVVRNVRRFFLSQHA 300

Query: 456 HEYPFCSQLMANFGQPWVLYVAALFHDIAKGRGGDHSKLGMADARAFCVQHGISEENTEL 515
           HEYPFCSQL ANF QPW+LY+AALFHDIAKGRGGDHS+LGM DAR FCV HG+SEE+TEL
Sbjct: 301 HEYPFCSQLAANFSQPWLLYIAALFHDIAKGRGGDHSQLGMEDARVFCVDHGLSEEDTEL 360

Query: 516 IVFLVEQHLAMSHVAQKQDMSDPDVITAFAQLVKDERHLTALYLLTVADIRGTSPKVWNA 575
           +VFLVE+HL MS  AQKQD+SDPDVI  FA++VKDERHLTALYLLTVADIRGTSPKVWNA
Sbjct: 361 VVFLVEKHLMMSQFAQKQDLSDPDVIADFARMVKDERHLTALYLLTVADIRGTSPKVWNA 420

Query: 576 WKGKLLEDLYRMTLRVLGGEAPSADRELKNTQQEAIKTLRLYGLPADAHEPLWKQLDVAY 635
           WKGKLLEDLY MT RV  G+APSADRELKN Q+EA+KTLRL+GL    HE LW+QLDV Y
Sbjct: 421 WKGKLLEDLYHMTSRVFDGDAPSADRELKNRQEEALKTLRLFGLSDKDHEKLWQQLDVVY 480

Query: 636 FLRHDASDIAWQTRCFYDKVDTGVPLVRCRLAPIGEGVQVAVYTPDRPDLFARICSYFDE 695
           FLRHDA +IAWQTR  Y+K D+ VP+V+CRLAPIGEG+QV VY  D+PDLFARICSYFD 
Sbjct: 481 FLRHDADEIAWQTRVLYEKTDSPVPVVKCRLAPIGEGLQVTVYVKDQPDLFARICSYFDH 540

Query: 696 KSFSIFDAKIHTTRNNYALDAFLINAPVFAKNYRDIINLIEHELGALLQSDAPLPPPSKA 755
           K+FSI DAKIHTT++ YALD FLI  P FA +YRD+I+LIEHEL   L +  PLP PSK 
Sbjct: 541 KNFSILDAKIHTTKHGYALDTFLITEPAFADHYRDLISLIEHELAETLTAQTPLPTPSKG 600

Query: 756 RLSRLSRTFPVNPAVDLRPDERGQYYLLSVSANDRAGLLYSISNVLAKYKINLHTAKVMT 815
           RLSRL R FP  P VDLRPDERG+ YLL+VSANDR GLLYSI++VLAKYK+NLHTAK+MT
Sbjct: 601 RLSRLCRNFPATPTVDLRPDERGRNYLLTVSANDRNGLLYSIAHVLAKYKVNLHTAKIMT 660

Query: 816 LGERVEDVFLIDGPGLSQPRNQILLETDLLKTLR 849
           LGERVEDVFLIDGP L  PR+QI LETDLL TLR
Sbjct: 661 LGERVEDVFLIDGPVLDNPRSQIQLETDLLDTLR 694


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,577,898
Number of extensions: 64065
Number of successful extensions: 177
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 1
Length of query: 850
Length of database: 1,000,347
Length adjustment: 90
Effective length of query: 760
Effective length of database: 703,797
Effective search space: 534885720
Effective search space used: 534885720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)