BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2026.p
         (161 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096471|ref|YP_001101546.1| hypothetical protein HEAR3319 [...   194   1e-51

>gi|134096471|ref|YP_001101546.1| hypothetical protein HEAR3319
           [Herminiimonas arsenicoxydans]
          Length = 160

 Score =  194 bits (494), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 94/152 (61%), Positives = 118/152 (77%), Gaps = 1/152 (0%)

Query: 11  FTLARNAFGRLVLT-DAQGGLHEHVIPVRAFPITSPESGLSLVSSDGHELAWIDTLDQVD 69
           F L+RNAFG+LV +   +  +HE V+PVRAFPI +P++G+++VS+DG ELAWID L  + 
Sbjct: 9   FQLSRNAFGKLVYSAPGETEVHEGVVPVRAFPIAAPDTGIAIVSTDGRELAWIDRLSDLP 68

Query: 70  AATRRLIEEELASREFMPEIERIVSVSTFATPSDWTVQTTRGTTTFTLKGEEDIRRLAAP 129
              R L+EEELASREF+PEI RI  VS FA+PS WTV T+RG     LKGEEDIRR+   
Sbjct: 69  ETIRGLLEEELASREFLPEITRIKHVSAFASPSTWTVATSRGDALLVLKGEEDIRRIGES 128

Query: 130 ALLIADSHGIQFLIRDQKALDKHSRKILDRFL 161
           +L+IAD+HGIQFLIRD + LDKHSRK+LDRFL
Sbjct: 129 SLIIADTHGIQFLIRDLQKLDKHSRKLLDRFL 160


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 244,673
Number of extensions: 7716
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 86
Effective length of database: 753,222
Effective search space: 64777092
Effective search space used: 64777092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)