BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2025.p (758 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096472|ref|YP_001101547.1| putative ABC transporter [Hermi... 1093 0.0 gi|134094288|ref|YP_001099363.1| putative ABC transporter permea... 305 6e-84 gi|134093506|ref|YP_001098581.1| ABC transporter ATP-binding pro... 281 8e-77 gi|134093728|ref|YP_001098803.1| lipid ABC transporter membrane/... 280 1e-76 gi|134096161|ref|YP_001101236.1| ABC transporter ATP-binding pro... 244 8e-66 >gi|134096472|ref|YP_001101547.1| putative ABC transporter [Herminiimonas arsenicoxydans] Length = 726 Score = 1093 bits (2826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 559/730 (76%), Positives = 621/730 (85%), Gaps = 7/730 (0%) Query: 25 LAPGEAVLAWLELDLDAQLHFKPSLLLATDTRLLACGPDGQPAQHWEYRPELQLKHYDHA 84 ++ E +LA L+LDLD+ LHF P +++ T+ RLL+ W EL LKHYDHA Sbjct: 1 MSKDEIILAHLDLDLDSSLHFVPGIVILTNMRLLSRSRTETGWHSWPCHAELTLKHYDHA 60 Query: 85 GVGTLELCDGAGRLAAWRYTLAQNPQALRLIKLFEQQRELLASGVTAEEEGDVCPTCKAV 144 GVGTLEL D RLA+WRYTLAQNP AL+LI FEQ + +ASGV P + Sbjct: 61 GVGTLELHDATSRLASWRYTLAQNPAALQLITSFEQLQHAIASGVA-------TPLAEPD 113 Query: 145 LPEGQDTCAICPETKEAPPSTWALFRLSRFAKPYKGSLLLGFLLTLASTAATLVPPYMTM 204 ++ + +E PPST +LFRL RFAKPY+G LLLGFLLTL STAATLVPPYMT+ Sbjct: 114 ARNEEEDADVDGVAEEQPPSTASLFRLWRFAKPYRGQLLLGFLLTLGSTAATLVPPYMTL 173 Query: 205 PLMDNVLIPFQNGAPIDTHLATLYLSGLLGAALLAWGLGWARTYILALVSERIGADLRTT 264 PLMDNVLIP+QNG ID+ L LYLSGL G+A+LAWGLGWARTYILALVSERIGADLRTT Sbjct: 174 PLMDNVLIPYQNGVEIDSSLVVLYLSGLFGSAVLAWGLGWARTYILALVSERIGADLRTT 233 Query: 265 TYAHLLRLSQEYFGGKRTGDLMARIGSETDRICVFLSLHLLDFAIDVLMIIMTAAILISI 324 TY HLLRLS EYFGGKRTGDLM RIGSETDRICVFLSLHLLDF DVLMIIMTAAILISI Sbjct: 234 TYEHLLRLSLEYFGGKRTGDLMTRIGSETDRICVFLSLHLLDFFTDVLMIIMTAAILISI 293 Query: 325 NPWLALVTLLPLPFIAWMIHVVRDRLRHGFEKIDRIWSEVTNVLADTIPGIRVVKAFAQE 384 NPWLALVTLLPLPFIAWMIHVVRD+LR+GFEKIDRIWS+VTNVLADTIPGIRVVKAFAQE Sbjct: 294 NPWLALVTLLPLPFIAWMIHVVRDKLRNGFEKIDRIWSQVTNVLADTIPGIRVVKAFAQE 353 Query: 385 KREVARFREANRHNLMVNDRVNKIWSLFTPTVTFLTEVGLLVVWVFGIWQVSSNQITVGV 444 KRE RFREAN+HNL +NDRVNK+WSLF+PTVT LTE+GLLVVW GIWQVS ITVGV Sbjct: 354 KREAVRFREANKHNLAINDRVNKVWSLFSPTVTLLTEIGLLVVWALGIWQVSQGLITVGV 413 Query: 445 LTAFLAYISRFYTRLDSMSRIVSVTQKAAAGAKRIFDILDHVSSVPEPANPVHLEKVEGA 504 LTAFLAYI+RFYTRLDSMSRIVSVTQKAA GAKRIFDILDHVSSVPE NPVHL V+G Sbjct: 414 LTAFLAYITRFYTRLDSMSRIVSVTQKAATGAKRIFDILDHVSSVPEATNPVHLTNVQGK 473 Query: 505 IEVRNIGFRYGNRAVIRNMSLSIAPGEMIGLVGHSGSGKSTMVNLICRFYDVSEGAIRID 564 I ++NIGFRYGNRAVIR + L I PGEMIGLVGHSGSGKST+VNLICRFYDVS+GAI +D Sbjct: 474 ITIKNIGFRYGNRAVIRGLDLDIQPGEMIGLVGHSGSGKSTLVNLICRFYDVSDGAILVD 533 Query: 565 GVDIRSLPISEYRRNIGLVLQEPFLFFGTIAENIAYGKPEATREEIIAAARAAHAHEFIL 624 G+D+RS+PI EYRRNIGLVLQEPFLFFGTIA+NIAYGKP+A+REEIIAAARAA+AHEFIL Sbjct: 534 GIDVRSIPIPEYRRNIGLVLQEPFLFFGTIADNIAYGKPDASREEIIAAARAANAHEFIL 593 Query: 625 RLPQGYDSLVGERGQALSGGERQRISIARALLIDPRILILDEATSSVDTTTEKEIQKALD 684 RLP GYDS+VGERGQ LSGGERQRISIARALLIDP ILILDEATSSVDTTTE+EIQKALD Sbjct: 594 RLPHGYDSMVGERGQTLSGGERQRISIARALLIDPHILILDEATSSVDTTTEREIQKALD 653 Query: 685 NLVQGRTTIAIAHRLSTLRKADRLVVLDRGQVVEVGNHEELMAREGHYYKLYQAQARNPD 744 NLV+GRTTIAIAHRLSTLR+ADR+VV+DRGQ+VEVG+H+EL+AREG YYKLYQAQ R + Sbjct: 654 NLVRGRTTIAIAHRLSTLRRADRIVVMDRGQIVEVGSHDELLAREGAYYKLYQAQQRQAE 713 Query: 745 GEAEVSVSEE 754 + +EE Sbjct: 714 QDMLEDSAEE 723 >gi|134094288|ref|YP_001099363.1| putative ABC transporter permease [Herminiimonas arsenicoxydans] Length = 579 Score = 305 bits (781), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 200/582 (34%), Positives = 319/582 (54%), Gaps = 23/582 (3%) Query: 171 LSRFAKPYKGSLLLGFLLTLASTAATLVPPYMTMPLMDNVLIPFQNGAPIDTHLATLYLS 230 L +F PYK L + + + AATL PY ++D + F DT Y Sbjct: 4 LLKFLLPYKKQFALAGIALIVAAAATLAIPYAFRQMID---LGFGANGIHDTGSINTYFL 60 Query: 231 GLLGAALLAWGLGWARTYILALVSERIGADLRTTTYAHLLRLSQEYFGGKRTGDLMARIG 290 L G A + AR Y+++ + ER+ AD+R Y+H++ S ++F ++G++++R+ Sbjct: 61 ALFGVACILALATAARFYMVSWLGERVTADVRNAVYSHVVTQSPQFFETTQSGEVLSRLT 120 Query: 291 SETDRICVFLSLHL-------LDFAIDVLMIIMTAAILISINPWLALVTLLPLPFIAWMI 343 ++T I + + L FA ++M+ +T+ L SI + + T+LP I W Sbjct: 121 TDTTLIQTLIGTSISMALRNTLLFAGGLVMLFVTSIKLSSIILVMLIATVLP---IVWFG 177 Query: 344 HVVRDRLRHGFEKIDRIWSEVTNVLADTIPGIRVVKAFAQEKREVARFREANRHNLMVND 403 VR R +++ ++ + + + + + V+AF EK E RF + Sbjct: 178 RRVRSLSRASQDRV----ADSSALAGEILNAMPTVQAFTHEKIESERFSKTVEDAFKTAM 233 Query: 404 RVNKIWSLFTPTVTFLTEVGLLVVWVFGIWQVSSNQITVGVLTAFLAYISRFYTRLDSMS 463 R + SL T L ++ V G V ++ G L F+ Y + + ++S Sbjct: 234 RRIRARSLLTMIAILLIFGAIVFVLWLGAHAVIDGTMSGGELGQFILYSAIVAGAIGALS 293 Query: 464 RIVSVTQKAAAGAKRIFDILDHVSSVPEPANPVHL--EKVEGA-IEVRNIGFRYGNRAV- 519 +V Q+AA +R+ ++L S + PA P+ L + G+ + + + F Y +R + Sbjct: 294 EVVGDAQRAAGATERLLELLAVQSPISSPAVPLPLPPRRANGSSLALDLVSFYYPSRPLT 353 Query: 520 --IRNMSLSIAPGEMIGLVGHSGSGKSTMVNLICRFYDVSEGAIRIDGVDIRSLPISEYR 577 I N S++I GE + +VG SG+GK+++ L+ RFYD EG I +DGVDIR L + R Sbjct: 354 PAISNFSIAIKAGETVAVVGPSGAGKTSLFQLLLRFYDPQEGVIELDGVDIRQLDLHALR 413 Query: 578 RNIGLVLQEPFLFFGTIAENIAYGKPEATREEIIAAARAAHAHEFILRLPQGYDSLVGER 637 IG+V Q+ +F ENI YG+P+A+ EE+IA A+ A AHEFI RLP+GY S +GER Sbjct: 414 NTIGIVPQDTVIFSANAMENIRYGRPDASDEEVIAVAKMAAAHEFIDRLPEGYQSFLGER 473 Query: 638 GQALSGGERQRISIARALLIDPRILILDEATSSVDTTTEKEIQKALDNLVQGRTTIAIAH 697 G LSGG+RQRI+IARALL +P +L+LDEATS++D +E+ +Q AL+ + GRTT+ IAH Sbjct: 474 GVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQSALEAAMVGRTTLVIAH 533 Query: 698 RLSTLRKADRLVVLDRGQVVEVGNHEELMAREGHYYKLYQAQ 739 RL+T+++A R++V++ G +VE G H L+A G Y L Q Sbjct: 534 RLATVQRAHRIIVMEHGHIVETGTHASLVAAGGLYASLAALQ 575 >gi|134093506|ref|YP_001098581.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 648 Score = 281 bits (719), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 179/510 (35%), Positives = 280/510 (54%), Gaps = 13/510 (2%) Query: 246 RTYILALVSERIGADLRTTTYAHLLRLSQEYFGGKRTGDLMARIGSETDRICVFLSLHLL 305 R Y A V++R + + HL LS + ++TG + I T I +S L Sbjct: 120 REYTFAKVTQRAVRTIALQVFRHLHALSLRFHLNRQTGGMTRDIERGTRGISSLVSYTLF 179 Query: 306 DFAIDVLMIIMTAAILI-SINPWLALVTLLPL-PFIAWMIHVV--RDRLRHGFEKIDRIW 361 ++ I + L+ + W +++T + L +IA+ + V R R +D Sbjct: 180 SILPTLVEITLVLGYLVLHYDIWFSIITAVALVSYIAFTVVVTEWRTHFRRTMNDLD--- 236 Query: 362 SEVTNVLADTIPGIRVVKAFAQEKREVARFREA-NRHNLMVNDRVNKIWSLFTPTVTFLT 420 S+ D++ VK F E E R+ E R+ + L T + + Sbjct: 237 SKANTKAIDSLINYETVKYFGNEDYEAKRYDEGLKRYETAAVKSQTSLSVLNTGQSSIIA 296 Query: 421 EVGLLVVWVFGIWQVSSNQITVGVLTAFLAYISRFYTRLDSMSRIVSVTQKAAAGAKRIF 480 L++W V S +T+G L A++ + Y L+ + I +++ A +R+F Sbjct: 297 VAVTLILWR-ATQGVISGTMTLGDLVLVNAFMIQLYIPLNFLGVIYREIKQSLADMERLF 355 Query: 481 DILDHVSSVPEPANPVHLEKVEGA-IEVRNIGFRY-GNRAVIRNMSLSIAPGEMIGLVGH 538 +LD + + N L V+GA ++ ++GF Y R ++ ++ +IA G +VGH Sbjct: 356 SLLDQHREIADKPNTQAL-VVQGAEVKFSHVGFSYEAKRQILFDVDFTIAAGTTTAVVGH 414 Query: 539 SGSGKSTMVNLICRFYDVSEGAIRIDGVDIRSLPISEYRRNIGLVLQEPFLFFGTIAENI 598 SGSGKST+ L+ RFYDV+EGAI IDG D+R + + R IG+V Q+ LF TI NI Sbjct: 415 SGSGKSTLSRLLFRFYDVNEGAILIDGQDVRDVTQASLRNAIGIVPQDTVLFNDTIEYNI 474 Query: 599 AYGKPEATREEIIAAARAAHAHEFILRLPQGYDSLVGERGQALSGGERQRISIARALLID 658 AYGKP A++++I+AAA++A+ H+FI LP GY ++VGERG LSGGE+QR++IAR LL Sbjct: 475 AYGKPGASKDDIVAAAKSAYIHDFIESLPDGYATMVGERGLKLSGGEKQRVAIARTLLKH 534 Query: 659 PRILILDEATSSVDTTTEKEIQKALDNLVQGRTTIAIAHRLSTLRKADRLVVLDRGQVVE 718 P ILI DEATS++D+ E+ IQ L + + RTT+ IAHRLST+ A +++VLD G++VE Sbjct: 535 PAILIFDEATSALDSKAEQAIQAQLKEIAKDRTTMVIAHRLSTIVDAAQILVLDHGRIVE 594 Query: 719 VGNHEELMAREGHYYKLY-QAQARNPDGEA 747 G H +L+A +G Y +++ + QAR + A Sbjct: 595 RGTHAQLLAADGAYAQMWARQQARQDESPA 624 >gi|134093728|ref|YP_001098803.1| lipid ABC transporter membrane/ATP-binding protein [Herminiimonas arsenicoxydans] Length = 581 Score = 280 bits (717), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 175/498 (35%), Positives = 275/498 (55%), Gaps = 8/498 (1%) Query: 253 VSERIGADLRTTTYAHLLRLSQEYFGGKRTGDLMARIGSETDRICVFLSLHLLDFAIDVL 312 VS R+ + LR + +L + ++G G ++ + E +I ++ D L Sbjct: 86 VSSRLLSTLRKKMFERILDVPLGFYGTHSVGRVINSMMFEVQQIIEMITKVYTSIIRDSL 145 Query: 313 MIIMTAAILISINPWLALVTLLPLPFIAWMIHVVRDRLRHGFEKIDRIWSEVTNVLADTI 372 +I+ A L +N L LV L+ LP IA ++ R+R + + +E+T V+ ++ Sbjct: 146 TVIVLLAFLFWLNWRLTLVALVLLPLIAIVVRFTGKRVRRLTREYQAVNAEMTQVIEEST 205 Query: 373 PGIRVVKAFAQEKREVARFREANRHNLMVNDRVNKIWSLFTPTVTFLTEVGLLVVWVFGI 432 +V+K F + E RF R+ + TP + + +V V + Sbjct: 206 RANQVIKIFGGHQYENDRFEVRADKLRSYTMRMASTLAATTPVTQIMASCAVAIVIVIAL 265 Query: 433 WQVSSNQITVGVLTAFLAYISRFYTRLDSMSRIVSVTQKAAAGAKRIFDILDHVSSVPEP 492 Q NQ TVG +F+ + L +++ + QK A+ +F ++D + PE Sbjct: 266 IQSEQNQTTVGGFVSFITAMLMLLAPLKNIAEVNGPLQKGLTAAEAVFGLID---AKPER 322 Query: 493 ANPVHLE-KVEGAIEVRNIGFRY-GNRAV-IRNMSLSIAPGEMIGLVGHSGSGKSTMVNL 549 + LE + G ++ N+GF Y G++++ + +++LS+ PGE I VG SG GKST+VNL Sbjct: 323 TSGKTLEARAAGKLDFINLGFSYPGHQSMALEDINLSVLPGETIAFVGMSGGGKSTLVNL 382 Query: 550 ICRFYDVSEGAIRIDGVDIRSLPISEYRRNIGLVLQEPFLFFGTIAENIAYGKPEATREE 609 + FY + G IR+D V I + ++ RR I +V Q LF TIA NIAYG R Sbjct: 383 VPGFYPATVGEIRLDDVPIEEIALTSLRRQIAMVSQHVVLFDDTIAANIAYGDETPDRAR 442 Query: 610 IIAAARAAHAHEFILRLPQGYDSLVGERGQALSGGERQRISIARALLIDPRILILDEATS 669 I+AAA AAH + I LPQG ++++G+ G LSGG+RQR++IARA+ D ILILDEATS Sbjct: 443 ILAAATAAHLDDVIAGLPQGLETMIGDNGSRLSGGQRQRLAIARAIYKDAPILILDEATS 502 Query: 670 SVDTTTEKEIQKALDNLVQGRTTIAIAHRLSTLRKADRLVVLDRGQVVEVGNHEELMARE 729 ++D+ +E+ +Q ALD L++GRTT+ IAHRLST+ +ADR+ VL G++VE+G+H+EL+ + Sbjct: 503 ALDSESERAVQAALDALMKGRTTLVIAHRLSTIERADRIAVLAEGRIVELGSHQELLEKN 562 Query: 730 GHYYKLYQAQ--ARNPDG 745 Y LY Q PD Sbjct: 563 AVYANLYHLQFAKEEPDA 580 >gi|134096161|ref|YP_001101236.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 618 Score = 244 bits (624), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 166/489 (33%), Positives = 262/489 (53%), Gaps = 30/489 (6%) Query: 274 QEYFGGKRTGDLMARIGSETDRICVFLSLHLLDFAIDVLMIIMTAAILISINPWLALVTL 333 Q+ F G+ +M + D +C+ ++ +L F I + + +++ + N W+ L Sbjct: 133 QDEFAGRVATKVMQTALAVRD-VCM-ITGDILVFVI--IYFVTLVSVVGTFNTWMML--- 185 Query: 334 LPLPFIAWM------IHVVRDRLRHGFEKIDRIWSEVTNVLADTIPGIRVVKAFAQEKRE 387 PF++W + RL H S +T + D I VK F+ RE Sbjct: 186 ---PFLSWAAVYGLALRYFVPRLSHVSRAQADARSLMTGRITDAYTNISTVKLFSHAGRE 242 Query: 388 VARFREANRHNLMVNDRVNKIWSLFTPTVTFLTEVGLLVVWVFGIWQVSSNQITVGVLTA 447 R A + + ++ S F L+ + +L +W + Q+ Sbjct: 243 AGYARTAMQEFMSAVHGQMRLVSGFEIVNHLLSMLLILSTAGVALWLWTQGQVG----VG 298 Query: 448 FLAYISRFYTRLDSMSRIV----SVTQKAAAGAKRIFDILDHVSSVPEPANPVHLEKVEG 503 +A + RL+ +S V + + + + L +V + A+ L+ + G Sbjct: 299 AVAAATAMALRLNGISHWVMWEMATLFEQVGTVQDGINTLARAHTVTDAADAAPLQVMRG 358 Query: 504 AIEVRNIGFRYG-NRAVIRNMSLSIAPGEMIGLVGHSGSGKSTMVNLICRFYDVSEGAIR 562 ++ ++GF YG RAVI +L+I PGE +GLVG SG+GKST+VNL+ RFYD+ +G I Sbjct: 359 ELKFDHVGFAYGGTRAVIDQFNLTIRPGEKVGLVGRSGAGKSTIVNLLLRFYDLEQGRIL 418 Query: 563 IDGVDIRSLPISEYRRNIGLVLQEPFLFFGTIAENIAYGKPEATREEIIAAARAAHAHEF 622 IDG DI + + R +G+V Q+ L ++ +NI YG+P+A+ ++I AA+ A AH+F Sbjct: 419 IDGQDIAHVTQNSLRAQVGMVTQDTSLLHRSVRDNILYGRPDASEADMIDAAKRAEAHDF 478 Query: 623 ILRLPQG-----YDSLVGERGQALSGGERQRISIARALLIDPRILILDEATSSVDTTTEK 677 IL L YD+ VGERG LSGG+RQRI+IAR +L D IL+LDEATS++D+ E Sbjct: 479 ILTLSDAKGRTAYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEA 538 Query: 678 EIQKALDNLVQGRTTIAIAHRLSTLRKADRLVVLDRGQVVEVGNHEELMAREGHYYKLYQ 737 IQ +L L++G+T +AIAHRLST+ DRL+VLD+G++VE G+H EL+ + G Y +L+ Sbjct: 539 AIQTSLYELMEGKTVVAIAHRLSTIAAMDRLIVLDKGRIVEQGSHRELLQQNGLYARLWA 598 Query: 738 AQARNPDGE 746 Q+ GE Sbjct: 599 HQSGGFLGE 607 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.137 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,336,094 Number of extensions: 51573 Number of successful extensions: 322 Number of sequences better than 1.0e-08: 47 Number of HSP's gapped: 254 Number of HSP's successfully gapped: 50 Length of query: 758 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 669 Effective length of database: 707,092 Effective search space: 473044548 Effective search space used: 473044548 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)